PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g011807m

Common Name

CISIN_1g011807mg, LOC102619992

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 478aa MW: 52213.4 Da PI: 9.0312

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g011807m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H orange1.1g011807m 81 FVCEVCNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	13.8	0.00017	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ orange1.1g011807m 158 WKCEKCSKVYAVQSDWKAHSKTC 180 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.22E-6	80	103	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-5	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.97	81	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.021	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.2E-4	146	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.22E-6	153	178	No hit	No description
SMART	SM00355	120	158	178	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MFPPAAGAAI SNSTSLSEEA ASVSSGTRVQ DFGGLNLIAS TISPQQQSQK AKKKRSLPGN 60 PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRSNKDIIKK 120 KAYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGERKWKC EKCSKVYAVQ SDWKAHSKTC 180 GTREYRCDCG TLFSRKDSFI THRAFCDALA EESARLSANQ LATTINTNGH PLHIASQNHS 240 SSSLFPFTTT HIALTPWDPP QNPNPNRNNP NNDPHPNPLY IKSETHHFQI PPPLSSSQYF 300 QEPQAVAATT KALITSPYQD LHMRTQPSLN ASATSAHHMS ATALLQKAAT VGSATAAQQV 360 HQSMGHHMTT TQLNMGELAA FNSVSHISPD AYLGFTSGNL STWQKSDRLT RDFLGLTGDG 420 HGDENVNGGA NAGVNVRNAL TYTAGLDFHP FERGRTLLRP QGFGFAEPAE SETWGDC*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MFPPAAGAAI SNSTSLSEEA ASVSSGTRVQ DFGGLNLIAS TISPQQQSQK AKKKRSLPGN  60
PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QRDQNLQLHR RGHNLPWKLK QRSNKDIIKK  120
KAYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGERKWKC EKCSKVYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRKDSFI THRAFCDALA EESARLSANQ LATTINTNGH PLHIASQNHS  240
SSSLFPFTTT HIALTPWDPP QNPNPNRNNP NNDPHPNPLY IKSETHHFQI PPPLSSSQYF  300
QEPQAVAATT KALITSPYQD LHMRTQPSLN ASATSAHHMS ATALLQKAAT VGSATAAQQV  360
HQSMGHHMTT TQLNMGELAA FNSVSHISPD AYLGFTSGNL STWQKSDRLT RDFLGLTGDG  420
HGDENVNGGA NAGVNVRNAL TYTAGLDFHP FERGRTLLRP QGFGFAEPAE SETWGDC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	154	218	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-36	154	218	3	67	Zinc finger protein JACKDAW
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.12535	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443977.1	0.0	protein indeterminate-domain 12
Refseq	XP_006479646.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-130	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A067FMJ9	0.0	A0A067FMJ9_CITSI; Uncharacterized protein
TrEMBL	V4TUR0	0.0	V4TUR0_9ROSI; Uncharacterized protein
STRING	XP_006479646.1	0.0	(Citrus sinensis)
STRING	XP_006443977.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-122	indeterminate(ID)-domain 12

Link Out ? help Back to Top
Phytozome	orange1.1g011807m
Entrez Gene	102619992

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]