PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011784m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-X1
Protein Properties Length: 478aa    MW: 53658.8 Da    PI: 8.6341
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011784mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.5e-06423120
           zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                       CG+H C++ C+ G+CppC++
  orange1.1g011784m  4 CGRHACKRRCCNGDCPPCSE 23
                       ******************85 PP
2zf-NF-X118.25.3e-062550120
           zf-NF-X1  1 CG......kHkCqklCHeGpCppCpq 20
                       CG      +HkC ++CH+G C pCp+
  orange1.1g011784m 25 CGkrllckNHKCPSPCHRGACAPCPL 50
                       777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.033423IPR000967Zinc finger, NF-X1-type
CDDcd060082.66E-112169No hitNo description
SMARTSM004380.0153150IPR000967Zinc finger, NF-X1-type
SMARTSM004384194109IPR000967Zinc finger, NF-X1-type
SMARTSM00438180117162IPR000967Zinc finger, NF-X1-type
SMARTSM0043817199232IPR000967Zinc finger, NF-X1-type
CDDcd060082.12E-5230271No hitNo description
SMARTSM004380.015242260IPR000967Zinc finger, NF-X1-type
SMARTSM0043857305327IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRDCGRHACK RRCCNGDCPP CSEICGKRLL CKNHKCPSPC HRGACAPCPL MVTISCACGE  60
TQFEVPCGTE KDQKPPKCRK SCHVIPLCRH RSICKPHKCH YGACPPCRLL CEEEYPCGHS  120
CKLSCHGPRP PPNPEFTLKT KKKKSNHQSE VTPGSPCPPC PELIWRSCVG EHIGAERMMV  180
CSDRTQFSCD NLCGNPLPCG NHYCTKYCHA LKSQSSLSVE TRSAESCEVC SLPCQKERLP  240
TCPHSCPLPC HPGECPPCKV LVKRSCHCGS MVHVFECIYF NTLSEKEQMA ARSCGGPCHR  300
KLPYCTHLCP EICHPGQCPL PEQCCKKVTV RCGCQTLKKE WQCLDVQAAY RNIGRDPKDI  360
SKNQFGLGLL RCNSDCKSKV QVVDSVLQSR KPKVEEKEPA TEKHVGKRRK RRERVRVVNQ  420
ASRLQRIFTA VKWLLLFVTL SVAVAAGLYY GYKGLLKLSD WMNEVEEQRQ RKRFPRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.92710.0fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435741.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2H5NJS10.0A0A2H5NJS1_CITUN; Uncharacterized protein
TrEMBLV4TGY20.0V4TGY2_9ROSI; Uncharacterized protein
STRINGXP_006486315.10.0(Citrus sinensis)
STRINGXP_006435741.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors