PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g011621m

Common Name

CISIN_1g011621mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 482aa MW: 52722.8 Da PI: 7.0949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g011621m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.7e-09	292	339	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq orange1.1g011621m 292 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 339 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	22	No hit	No description
CDD	cd00083	1.01E-10	286	343	No hit	No description
SuperFamily	SSF47459	3.27E-17	286	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-17	288	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-6	292	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	294	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MEKEDLLMNE GVNSTPPTWS SCNFSSEKVI TNCCLNPNWD YSMDQSDPFE AALSSIVSSP 60 AASNAPTTCS VIIPADGGGD NVMIRELIGR LGSICNSGEV LPQSYIQAQN NNNSNTCCYS 120 TPLNSPPLPK LNLSMIRGSK SSNNLPIPAA DPGFAERAAR LSCFAGSQMN MNSSVSASDS 180 KKLRVSRSST PESNNNADSK EGSSLSEQIT SQTVTDSNPR KRKSIQRPKA KETPPTSDPK 240 VVAENPEDSN SMRSKQDENK SDSSKTKDNS KPVEPPKDYI HVRARRGQAT DSHSLAERVR 300 REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDLNM 360 EALLSKDLFQ SCGYVQHSLY PGDCSVQTFP SRYQPQQGSH LTSSGINNNA ENQFSINALN 420 SSLHRNHNIQ LPPINGHGEV GPRVPSLWDD DLQSLVQMGF NQNQPRSLNG SMATTQMKIE 480 M*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MEKEDLLMNE GVNSTPPTWS SCNFSSEKVI TNCCLNPNWD YSMDQSDPFE AALSSIVSSP  60
AASNAPTTCS VIIPADGGGD NVMIRELIGR LGSICNSGEV LPQSYIQAQN NNNSNTCCYS  120
TPLNSPPLPK LNLSMIRGSK SSNNLPIPAA DPGFAERAAR LSCFAGSQMN MNSSVSASDS  180
KKLRVSRSST PESNNNADSK EGSSLSEQIT SQTVTDSNPR KRKSIQRPKA KETPPTSDPK  240
VVAENPEDSN SMRSKQDENK SDSSKTKDNS KPVEPPKDYI HVRARRGQAT DSHSLAERVR  300
REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMDLNM  360
EALLSKDLFQ SCGYVQHSLY PGDCSVQTFP SRYQPQQGSH LTSSGINNNA ENQFSINALN  420
SSLHRNHNIQ LPPINGHGEV GPRVPSLWDD DLQSLVQMGF NQNQPRSLNG SMATTQMKIE  480
M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421053.1	0.0	transcription factor bHLH62
TrEMBL	A0A067ENQ2	0.0	A0A067ENQ2_CITSI; Uncharacterized protein
STRING	XP_006421053.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-84	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g011621m