PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011373m
Common NameCISIN_1g011373mg, LOC102615855
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 488aa    MW: 52830.4 Da    PI: 6.4321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011373mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-053784151254
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A++YIk L
  orange1.1g011373m 378 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 415
                        677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.41E-6376420No hitNo description
SuperFamilySSF474592.62E-11376432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-8380422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAEEFQTGIC GGAWWINPTR SSSLSPCSAA GIGLSDHMGS FLWPSNDHFH MVDTKTTTLT  60
PAGTATTKFC EESANNNNNN NSVSADTSSM AFTEKHQQTD SDSGGSSSIL MDSTLQMMSL  120
VPSSSSSSTD CFQALLRGNG RAENNYRSMR LEDLNSQIQK EWSPSKSYAS SAGAGDHHQE  180
CFSLDQSHPV IKSATASFPD NCTVSESSCQ GLSPGFPVDS ASYGYTSALL QSYFEPQPQP  240
VQQQSLYSSN NTRSMGNYMS TANYGNNYNE VSPPWPKFAA ASFVKPSLPK QQQPSGGLHF  300
SNNTPFWNAT ALNDISRPGG LLAAALGEKR TCPTFTAKYN NNEEVRDSGS AAKKGSSEPA  360
FKRPRIETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAID YIKFLHDQVS  420
VLATPYMKQG TQIPQQQSCD HKLKDPEAPK QDLNSRGLCL VPISSTFPVA NETTADFWTP  480
TFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467938.10.0transcription factor bHLH112 isoform X1
TrEMBLA0A067G7S80.0A0A067G7S8_CITSI; Uncharacterized protein
STRINGXP_006467938.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.14e-61bHLH family protein