PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g011340m | ||||||||
Common Name | CISIN_1g011340mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 489aa MW: 53282.5 Da PI: 6.9234 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86 | 3.4e-27 | 98 | 155 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef rsYY+Ct+++C +kk++++++ ++++v+++Y+g+H h+k orange1.1g011340m 98 EDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH-EGQIVDTIYSGDHCHPK 155 7**************************************99.***************85 PP | |||||||
2 | WRKY | 104 | 7.9e-33 | 269 | 327 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK vkg+++pr+YYrC+ +gCp+kk+ver+++dpk+v++tYeg+H+h+ orange1.1g011340m 269 VNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHD 327 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-23 | 90 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.049 | 92 | 156 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-21 | 93 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-27 | 97 | 155 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-20 | 98 | 154 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-34 | 257 | 329 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-29 | 261 | 329 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.622 | 264 | 329 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-38 | 269 | 328 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-26 | 270 | 326 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MVSSGEDGLD EVASDKLQHE PGPVSETHAL QSDQGFSTPI LSRKSLMLPD TGHLLPSDQE 60 RSISSITSEK ASQTTDIIPA LQTGQEVSTP TIREKVSEDG YNWRKYGQKL VRGNEFVRSY 120 YKCTHPRCLA KKQLDCTHEG QIVDTIYSGD HCHPKVPNVP LAVGIVVSVV EEKPEVSSIS 180 SAKDKSSDTH GQTPRQTERN DNSRLSVAAA SGGMKDPLIS NRMKDEVDND DRPGSKRRKK 240 DHFNANASPV EKLTGEHRVV QTLSEVDFVN DGYRWRKYGQ KLVKGNPNPR NYYRCSNSGC 300 PAKKHVERAS HDPKLVITTY EGRHDHDMPP SRTVTPNVAG TKNSKTAHNG ESAKLEEIDA 360 VCSDTDVHRS SDTLSKSTEG KNGEPKTKSE ATATASVGLV KSEQSAVHPE SKSSEPQNGN 420 SRTIEGSDVA HGRSCHKGSS NDQSNCESET KSEQNGTACR DKVIQATSLP DANYGEQEQT 480 PKAEAVRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-34 | 259 | 330 | 4 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.6862 | 0.0 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447745.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_006469519.1 | 0.0 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 6e-83 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A067F5F0 | 0.0 | A0A067F5F0_CITSI; Uncharacterized protein | ||||
STRING | XP_006469519.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447745.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 2e-84 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g011340m |
Publications ? help Back to Top | |||
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