PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g011273m | ||||||||
Common Name | CISIN_1g007940mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 490aa MW: 54731.4 Da PI: 6.5071 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77 | 2.5e-24 | 105 | 158 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl orange1.1g011273m 105 KARVVWSIDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 158 68*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 14.541 | 1 | 39 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 3.8E-10 | 1 | 59 | No hit | No description |
SuperFamily | SSF52172 | 3.27E-6 | 2 | 50 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 103 | 163 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.09E-17 | 103 | 162 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-21 | 105 | 158 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-7 | 107 | 157 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 490 aa Download sequence Send to blast |
MSVDGETSRV MKGVQHGACD YLLKPIRMKE LRNIWQHVFR KKIHEVRDIE NIEGFESIHM 60 TRSGSDQSVD GPLLTGEDLT SVRKRKDAEN RHDDRDCGDA SSTKKARVVW SIDLHQKFVK 120 AVNQIGFDKV GPKKILDLMN VPWLTRENVA SHLQKYRLYL TRLQKDELKT SVGGIKQKDS 180 PSKDSAASFG IQNSITVHHH NDVSNGGYRF SGSNSVVQNV DAKSLEGDVK GIDTIPVTGH 240 KRVLTVDIPN SHKARCSQIG FNGSFVPGHS DVNFTSFDSA IPTQPWSEVS ETQFQHEHKP 300 LRLENDFTQL PLPGPRHHIQ VDCIQSGPSA SSKPSVVDKD NLKPFDCTYK SNYPNAIPIG 360 SAVDTFPVQT TSPIVNHQPF EPIARTTSSM KSQGLNLSCI PDLEAAQRNI NWGVGSSLTS 420 LDEDLQLCWL QGDCFAMNLG LQDINFSEYN DPALNSEVPF HLYDTMRFDY EHYYDPTECP 480 IIDQGLFIA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 101 | 163 | 1 | 63 | ARR10-B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484016.1 | 0.0 | two-component response regulator ARR11 isoform X1 | ||||
Refseq | XP_006484017.1 | 0.0 | two-component response regulator ARR11 isoform X2 | ||||
TrEMBL | A0A067GQQ8 | 0.0 | A0A067GQQ8_CITSI; Uncharacterized protein | ||||
STRING | XP_006484017.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 5e-91 | response regulator 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g011273m |