PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011260m
Common NameCISIN_1g011260mg, LOC102616876
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 491aa    MW: 54884.1 Da    PI: 4.4156
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011260mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-341302212102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye++ed+e++ ++sws n nsf+v+++++f++++LpkyFkh+nf+SF+RQLn+YgFkk+++++         weF++++F+ gkk+l
  orange1.1g011260m 130 FLRKIYEMVEDPETDPVVSWSLNRNSFIVWESHDFSENLLPKYFKHKNFSSFIRQLNTYGFKKIHSNR---------WEFANEKFRGGKKHL 212
                        9********************999****************************************9998.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+++
  orange1.1g011260m 213 LKNIKRRSR 221
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-52126219IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-36126219IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-32126219IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-30130219IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18130153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18168180IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340169193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18181193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVIPTAVAGG AGGTFCSVCS SNLFPKPKSC QDVAMETIEE TVETENKIPL ITVKEDEEEE  60
KEASTYENSN GGGPSSSSSS MPTLPRIKEE EEEEEEEEEE EEGAFDDELV GGGSLPKPME  120
GLNEVGPPPF LRKIYEMVED PETDPVVSWS LNRNSFIVWE SHDFSENLLP KYFKHKNFSS  180
FIRQLNTYGF KKIHSNRWEF ANEKFRGGKK HLLKNIKRRS RFNKAQDGTV TLACVDSAKF  240
GVEMELETLR NDQKTLRLEM LKLRQQQDES LCQMSAVAER IRCAECKQQQ MLNFFAKIAK  300
YPNFVQQLVH KRKQQRELHG DEFKLSKKPR LTATQLESQS VPESVDSSEN VNCRNQAREQ  360
LATMQSELTD MLPADSTNID TTDTPPAFQA LMDDDGLCRS PIQDLKGNVM CTCGNGTTIT  420
AQDSSSVYNT FLGNVLGDSS ITENGTDDDQ VAVSDSQLFH ELEDLIGKSH SWGGYVNELA  480
EQVDCDGSIL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-221302194104Putative transcription factor
5d5x_B2e-221302194104Putative transcription factor
5d5x_E2e-221302194104Putative transcription factor
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212218LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475478.10.0heat shock factor protein HSF30
TrEMBLA0A067E3H80.0A0A067E3H8_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3360.0A0A2H5Q336_CITUN; Uncharacterized protein
STRINGXP_006475478.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-82heat shock transcription factor A2