PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g011193m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 492aa MW: 54579.3 Da PI: 7.06

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g011193m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00066	386	420	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +++ L++++ + +K + a++L +A+ YIk Lq orange1.1g011193m 386 LADKITALQQIVSPF-----GKTDTASVLYEAIGYIKFLQ 420 678999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.067	370	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-8	385	428	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.25E-4	385	424	No hit	No description
SuperFamily	SSF47459	1.05E-9	385	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MAKESTQSSV ATSPLTTTNW WDLHNHHHHH ASSISSWTNA SCSPWHQQQN PNSNSSCEEE 60 VSNISTSFTY ASNQSGLSVE SSHRLDEPAT VGAATSNELI GEHAPDNHQL WSHVFLSDGN 120 NGDLHNSHQE IGENLLLNTL SSKTISSSTG MIFDPAYDYL KKMDSSNWEF TTNSSSFNNN 180 NFEKHLNGIT TTSGETERLN KLSNLVSHWS IAPPDPQIGP HFINPESTCD NIRNSGLLSY 240 YGHNDFKMEN EFLKPFTSSN GFGYNNVGFN GSTCSMVEAD DGDNKYYYGA RNFADAITLS 300 SRLSKPLIDI HIPNKPYFKS SLNLLSECKK KQGLRTSSPM RICGKERGIS NEGKKKRYEE 360 NSEAVVKKSK TESSTASSAK APKVKLADKI TALQQIVSPF GKTDTASVLY EAIGYIKFLQ 420 EQVQLLSNPY MKSNLHKDPW GSLDRKEKGD VKVDLRSRGL CVVPISCTPK AYHDNNGSDY 480 WTPAYRGCLY R*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MAKESTQSSV ATSPLTTTNW WDLHNHHHHH ASSISSWTNA SCSPWHQQQN PNSNSSCEEE  60
VSNISTSFTY ASNQSGLSVE SSHRLDEPAT VGAATSNELI GEHAPDNHQL WSHVFLSDGN  120
NGDLHNSHQE IGENLLLNTL SSKTISSSTG MIFDPAYDYL KKMDSSNWEF TTNSSSFNNN  180
NFEKHLNGIT TTSGETERLN KLSNLVSHWS IAPPDPQIGP HFINPESTCD NIRNSGLLSY  240
YGHNDFKMEN EFLKPFTSSN GFGYNNVGFN GSTCSMVEAD DGDNKYYYGA RNFADAITLS  300
SRLSKPLIDI HIPNKPYFKS SLNLLSECKK KQGLRTSSPM RICGKERGIS NEGKKKRYEE  360
NSEAVVKKSK TESSTASSAK APKVKLADKI TALQQIVSPF GKTDTASVLY EAIGYIKFLQ  420
EQVQLLSNPY MKSNLHKDPW GSLDRKEKGD VKVDLRSRGL CVVPISCTPK AYHDNNGSDY  480
WTPAYRGCLY R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006470882.1	0.0	transcription factor bHLH111
TrEMBL	A0A067EI22	0.0	A0A067EI22_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006470882.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	3e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g011193m