PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g011048m | ||||||||
Common Name | CISIN_1g011048mg, LOC102608032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 495aa MW: 54076.9 Da PI: 7.0944 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.4 | 1.2e-31 | 271 | 326 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ orange1.1g011048m 271 KARRCWSPDLHRRFVSALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 326 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-17 | 268 | 329 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.251 | 268 | 328 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-28 | 269 | 329 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-26 | 271 | 326 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-6 | 273 | 324 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MASHSELSLD CKPHSYSMLL KAFGDQAADH ETQKLEEVLA RLEEERFKID GLKRELPLCM 60 QLLTNAVEVS RQQLQAYRAT NQGPRPVLEE FMPLKNSSSE ISETKSQNIS DKANWMTTAQ 120 LWSQTGNNET KSQNTIAASP KETTTDIVGF NVISPKLALD TKQRNGGAFV PFSKERNSCP 180 SPTLRALPDL ALASPDKEMD HQDNRCSENE NGRRENLGNH NNNNKISNCN GGAVLHEQVK 240 GVAGNSTEGQ TNSNNPTNNN NNNNNNNTHR KARRCWSPDL HRRFVSALQM LGGSQVATPK 300 QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SPSPQQAGAP APQLVVLGGI WVPSEYTTAA 360 AAAHSGTPAL YHHPSPHPPS HFCAASPVPQ DFYTTAAPAA PQPPPPLPPL SPAHHQLHLH 420 NQIHMYKATS QGHSSPESDI RGIGDRSESI EDGKSESSSW KGESGDNGVA ERKGLAALRE 480 DGEESNGSEI TLKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-14 | 271 | 324 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-14 | 271 | 324 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-14 | 271 | 324 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-14 | 271 | 324 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-14 | 271 | 324 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475768.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 1e-131 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | A0A067GKY6 | 0.0 | A0A067GKY6_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PDT9 | 0.0 | A0A2H5PDT9_CITUN; Uncharacterized protein | ||||
STRING | XP_006475768.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7134 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-104 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g011048m |
Entrez Gene | 102608032 |
Publications ? help Back to Top | |||
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