PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g010978m | ||||||||
Common Name | CISIN_1g011006mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 497aa MW: 54795.2 Da PI: 6.3827 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.6 | 1.4e-33 | 265 | 319 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl orange1.1g010978m 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.419 | 262 | 322 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-18 | 263 | 319 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-32 | 264 | 320 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-26 | 265 | 320 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-10 | 267 | 318 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.0E-21 | 354 | 400 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MNHHSIISVT KNESNKGVSQ SCCSALSPIH NFQTECQSLS TGEYPFPHPS PFIRKESLSS 60 PNRMQASTVV PKENGLISTS DSPISPGSHF QHSKGGFSRS SVFCTSLYLS SSASSETHRQ 120 IGNFPFLPHP RTFNQSVSAV DSTKSSLLFS EDMGNAYQEE HSESLMKGFL NFPEDASDGS 180 FPGVTCMGER LGLNEHLELQ FLSDELDIDI TDHGENPRLD EIYDAPKSSL KPPMGLSCKE 240 NYVSSAPPVD ALSSHTSPAS ATAHKPRMRW TPELHECFVE AVNKLDGPEK ATPKAVLKLM 300 NVEGLTIYHV KSHLQKYRLA KYMPEKKEEK KTCSSEEKKA TSSIESDGRK KGSIQFTEAL 360 RMQMEVQKQL HEQLEVQRAL QLRIEEHARY LEKIVAEQQK DGSATILPQA QSLSTITNGS 420 KDSEQQPSSP SFTVSAILSP EQPAESKTES SSTSLLSKHK ATDSRESKPD ACLKRIRLEN 480 KPEITSDEAV VENPVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-25 | 265 | 322 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11081 | 0.0 | flower |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488616.1 | 0.0 | myb family transcription factor PHL6 | ||||
Refseq | XP_006488617.1 | 0.0 | myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 1e-137 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A067FLS1 | 0.0 | A0A067FLS1_CITSI; Uncharacterized protein | ||||
STRING | XP_006488616.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-114 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g010978m |
Publications ? help Back to Top | |||
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