PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010978m
Common NameCISIN_1g011006mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 497aa    MW: 54795.2 Da    PI: 6.3827
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010978mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.61.4e-33265319155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr+rWtpeLHe+Fveav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  orange1.1g010978m 265 KPRMRWTPELHECFVEAVNKLDGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 319
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.419262322IPR017930Myb domain
SuperFamilySSF466894.3E-18263319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-32264320IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-26265320IPR006447Myb domain, plants
PfamPF002494.1E-10267318IPR001005SANT/Myb domain
PfamPF143793.0E-21354400IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MNHHSIISVT KNESNKGVSQ SCCSALSPIH NFQTECQSLS TGEYPFPHPS PFIRKESLSS  60
PNRMQASTVV PKENGLISTS DSPISPGSHF QHSKGGFSRS SVFCTSLYLS SSASSETHRQ  120
IGNFPFLPHP RTFNQSVSAV DSTKSSLLFS EDMGNAYQEE HSESLMKGFL NFPEDASDGS  180
FPGVTCMGER LGLNEHLELQ FLSDELDIDI TDHGENPRLD EIYDAPKSSL KPPMGLSCKE  240
NYVSSAPPVD ALSSHTSPAS ATAHKPRMRW TPELHECFVE AVNKLDGPEK ATPKAVLKLM  300
NVEGLTIYHV KSHLQKYRLA KYMPEKKEEK KTCSSEEKKA TSSIESDGRK KGSIQFTEAL  360
RMQMEVQKQL HEQLEVQRAL QLRIEEHARY LEKIVAEQQK DGSATILPQA QSLSTITNGS  420
KDSEQQPSSP SFTVSAILSP EQPAESKTES SSTSLLSKHK ATDSRESKPD ACLKRIRLEN  480
KPEITSDEAV VENPVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-25265322259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.110810.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488616.10.0myb family transcription factor PHL6
RefseqXP_006488617.10.0myb family transcription factor PHL6
SwissprotQ949U21e-137PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A067FLS10.0A0A067FLS1_CITSI; Uncharacterized protein
STRINGXP_006488616.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-114G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]