PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010903m
Common NameCISIN_1g010903mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 499aa    MW: 54640.7 Da    PI: 8.1107
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010903mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.6e-30159218159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r +ed +++++tYeg+Hnh+
  orange1.1g010903m 159 MNDGCQWRKYGQKIAKGNPCPRAYYRCTISpTCPVRKQVQRWHEDMSILITTYEGTHNHP 218
                        58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30144220IPR003657WRKY domain
SuperFamilySSF1182907.06E-27152220IPR003657WRKY domain
PROSITE profilePS5081128.185154220IPR003657WRKY domain
SMARTSM007748.5E-34159219IPR003657WRKY domain
PfamPF031062.9E-26160218IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAKDYQSLQS HFLDILQQEE AQKSKDKIST HHDQENEEVD ELVSLSLGRT SAQPKKDEKK  60
ICNNLSDGHE KNDKEGLALG LDCSRFEFSS NSRESENRPS PANTTCEQLK EQEPTEIWSP  120
SKINIKSKRS DDQDEEVFQK AQLKKARVSV RARCDTPTMN DGCQWRKYGQ KIAKGNPCPR  180
AYYRCTISPT CPVRKQVQRW HEDMSILITT YEGTHNHPLP ISATAMASTT SAAASMLQCR  240
SSTSQLGTSV SVSTPPNLHG LNFIFSENAR PHDQLNFSSS SISNTNAHPT IVLDLTAPAT  300
FSHFNRLSSS APRYNSSSTS LNFSSPFSTN SLQTSWSSGY SNNYANYLGK QPAQEHIYKP  360
YMQMMNNPRT PPPIPQVQSL TESTIAATTK IITSNPNFQS ALAAAISSYI GQQNVGGPGE  420
SSSLDMKCGK PNFSIKSAAD SSAQNGTLGF ASSLLDKYLP SSTHQQPAVS IFPLNSPPFS  480
ASKTALGSPV EVKDHVKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-20146220174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483224.10.0probable WRKY transcription factor 36 isoform X1
TrEMBLA0A067GVV90.0A0A067GVV9_CITSI; Uncharacterized protein
STRINGXP_006483224.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-59WRKY DNA-binding protein 72