PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g010728m | ||||||||
Common Name | CISIN_1g010728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 503aa MW: 55642.6 Da PI: 6.5779 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.8e-13 | 357 | 403 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq orange1.1g010728m 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 403 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.4E-45 | 49 | 231 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-18 | 356 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-14 | 356 | 407 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-18 | 357 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-10 | 357 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-14 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00772 | 438 | 500 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MAEKFWTKEE DKAMVESVLG TEACEFLIKS TANNVMAELV TPPGDLGVHQ RLCQVVEGSN 60 WNYAIYWHAS NLKSGGSALI WGDGHCRDPK DGAVGGGKSS GVNKVDEVER KEEVKKRVLQ 120 KLHACFGGLE NYASRFDGVS GVEMFYLTSM YFNFRCDSAY GPGHAYKSGR SIWTSGIVSC 180 SDHYESRSFL AMSAGFQTVV FVPAKSGVVE LGSVKLIPEE QNVVEMVKTV FEGSSSVQTK 240 VFPKIFGHEL SLGGSKSQSI SINFSPKVED ELNFASDSYE IQAIGSNQVY GNSSNRCRSE 300 DEAKLFPHLN QMIVGGFDAQ ARVSSLEQKD DSSPQGDDRK PRKRGRKPAN GREEPLNHVE 360 AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQMKIRVLE TEKDMSNNKQ 420 KQISVPEIDF QPRHEDAVVR VSCPLDDHPV SSVMKTFSEH QIVAQESNVS TTEDKVIHTF 480 SIQTQSGASE QLKEKLLAAL SK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_B | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_E | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_F | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_G | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_I | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_M | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
5gnj_N | 1e-28 | 351 | 425 | 2 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 346 | RKPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.76 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479569.1 | 0.0 | transcription factor bHLH3 | ||||
Refseq | XP_024044801.1 | 0.0 | transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A067FM98 | 0.0 | A0A067FM98_CITSI; Uncharacterized protein | ||||
STRING | XP_006479569.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443887.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6611 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-171 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g010728m |
Publications ? help Back to Top | |||
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