PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010166m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 517aa    MW: 56279.4 Da    PI: 4.6671
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010166mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.17.8e-35401312102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d ++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  orange1.1g010166m  40 FLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHL 122
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i r+k 
  orange1.1g010166m 123 LRSISRRKP 131
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3930123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-6236129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3436129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.9E-204063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDGAANRGGG AGDPSATGGG GTPPSQPTPV QNATNAPPPF LSKTYDMVDD LATDSIVSWS  60
PTSNSFVVWN PPEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK  120
HLLRSISRRK PAHGHGHQQS HQQNAQSSSV GACVEVGKFG LEEEVERLKR DKNVLMQELV  180
RLRQQQQASD SQLQTMVQRL QGMEQRHQQM MAFLAKAVQS PGFLAQFVQQ QNDSNKRIAE  240
ANKKRRIRQE GVAEDDHATT ADGQIVKYQP SMNEAAKSML RKIIKMESSQ LESFNNNHDN  300
YLIGDGASSS NTGSTSSRMS GVTLQEVPQT SGPYAPAASG ILADGPSAAA TERQSSSRAI  360
ASEKTTTDQF PDINLLVAAQ EATSLPISES DVIMPDLAQI PEIMPESMDG IPAESFIGSR  420
MENGGYVDPT SLIVNGSVPI EIDDISTDAD IDALLESSGL WDIVHSPVPE DIESTSVDVK  480
TVGNEMQAIE NGWNKVQSMD QLTEQMGLLN SETKEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-27381298110Heat shock factor protein 1
5hdn_A8e-27381298110Heat shock factor protein 1
5hdn_B8e-27381298110Heat shock factor protein 1
5hdn_C8e-27381298110Heat shock factor protein 1
5hdn_D8e-27381298110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485538.10.0heat shock factor protein HSF8-like isoform X1
RefseqXP_006485542.10.0heat shock factor protein HSF8-like isoform X1
RefseqXP_024046927.10.0heat shock factor protein HSF8 isoform X1
RefseqXP_024956189.10.0heat shock factor protein HSF8-like isoform X1
SwissprotQ401521e-178HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2H5QTN20.0A0A2H5QTN2_CITUN; Uncharacterized protein
STRINGXP_006485538.10.0(Citrus sinensis)
STRINGXP_006485540.10.0(Citrus sinensis)
STRINGXP_006485542.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-133heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]