PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g010045m | ||||||||
Common Name | CISIN_1g010045mg, LOC102611966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 520aa MW: 56319 Da PI: 4.6894 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 299 | 344 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq orange1.1g010045m 299 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 344 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.51E-17 | 292 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-12 | 292 | 348 | No hit | No description |
PROSITE profile | PS50888 | 17.263 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 296 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-9 | 299 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-13 | 300 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 520 aa Download sequence Send to blast |
MDEYLDHYFS SSSWSDVNAK ERSSWDYSEP LQQNQLLPNS IGVYKDDEKN SPVGIAMEGL 60 AAQDTSSFVL GEESEYGIDK NLLSEETQYE KDGQNCNGNL SSMNRSLKLG NVGLQYDPAI 120 PTLGSMNLGS PKQLPLIGEM TTSPSFVDSE HVGGNSSELS DIQRSLRDLQ TISPSPELWL 180 PTSYEEVSSL SSVIEQPRTR GFYLQGATMN HDVDTTGNRY VGMDKILQFD YLSASIVAKG 240 EQELPNHPLS CFSSRPLPTV PTVGLPSLQQ TASANPTGGC NGTGKARVRA RRGQATDPHS 300 IAERLRREKI AERMKNLQEL VPNSNKTDKA SMLDEIIDYV KFLQLQVKVL SMSRLGAAGA 360 VLPLITDGQA EASKGLSLSP QADQGVDISL NSDQIAFEEE VVKLMESNVT KAMQYLQNKG 420 LCLMPIALAT AISSGKASSS DTISEENKFC FSNGLVQSNS SSASSNSSLP NNGINQMPLN 480 TNIIIGKPIG ESILVNGCNR AVKEERNSQC TARELKPKT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 285 | 293 | ARVRARRGQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006474565.1 | 0.0 | uncharacterized protein LOC102611966 isoform X1 | ||||
Refseq | XP_015384588.1 | 0.0 | uncharacterized protein LOC102611966 isoform X1 | ||||
TrEMBL | A0A067G2G4 | 0.0 | A0A067G2G4_CITSI; Uncharacterized protein | ||||
STRING | XP_006474565.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16266 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-59 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g010045m |
Entrez Gene | 102611966 |