PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009918m
Common NameCISIN_1g009918mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 523aa    MW: 56271.1 Da    PI: 6.4465
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009918mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.33.1e-24173215244
                WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         epgrCrRtDGKkWRCsr+v +++k+CErHlhrgr rsrk++e
  orange1.1g009918m 173 LEPGRCRRTDGKKWRCSRDVAPDQKYCERHLHRGRPRSRKPVE 215
                        69**************************************987 PP
2QLQ53.95.6e-19113146235
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                        +FT+aQ+ +L++Q+l+yK+++a++PvP++Ll++ 
  orange1.1g009918m 113 PFTNAQWTELERQALIYKCMVASVPVPSDLLFPF 146
                        8******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.4E-11112148IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-12113145IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.368113148IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65172216IPR014977WRC domain
PfamPF088791.2E-20174215IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MMSGRIMDAC DFSFINEAAA EEEGKVKEAG SNRHRPSPSD EFGWGDAIAA GPTCNNNINN  60
SSSSSHIYKT IGYVSSDVSG SSTSMKTLQP FQFDIAAATV NEAPGMAARM GFPFTNAQWT  120
ELERQALIYK CMVASVPVPS DLLFPFTRNR NSAAAAAAPV GLDLIRLSKG GDLEPGRCRR  180
TDGKKWRCSR DVAPDQKYCE RHLHRGRPRS RKPVELQPPP NSKKKTRLQS HPLNTTNTVN  240
NSNNNNLDFS ASQFVRNFTQ YPHPHVREQR CLDKDWMMRG EAVHLPSNAA GTEWNHLINN  300
PASPVNINQH YHLEEPLNLN SFASFSAGEA QQSNDCPFYT DPDLVPRVFI DAWSNANGVS  360
NGDDQIHNTN SGTKSSVSSS GNLSLSPLSL SMGGNSTIDE EMGQLQMGLG LVESSQDHKC  420
DTNPQLSSWL NPDSWAPGGP LAEVLRPSTV PASASGPPSP AAGNGDSDSP PATTVSSPSG  480
VLQKALVSWS DSSGNSSPTP GSSRTNKSEI ALLWFGQGKL ES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441217.10.0growth-regulating factor 2 isoform X2
TrEMBLA0A067ECM30.0A0A067ECM3_CITSI; Uncharacterized protein
STRINGXP_006493185.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.17e-35growth-regulating factor 7