PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009907m
Common NameCISIN_1g009938mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 523aa    MW: 57309.7 Da    PI: 8.502
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009907mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.31.7e-351192792135
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa 70 
                         g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                       +    
  orange1.1g009907m 119 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGVDQPSKAVEWLIKAAADSIAELPSLnstfpetpkqlsdekrasegtdqQ---- 206
                        689*************************************************************776655554444433333321110.... PP

                TCP  71 seceaesssssasnsssg.....................kaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                                         g                      + +++a+s++s++s+ s l+l++      r kar+rarer ++++ +k++
  orange1.1g009907m 207 -----------------GfdsveldgdpnnnyqqnqsqhLSLSKSACSSNSETSKGSGLSLSRselrVNRDKARERARERAAKEKDQKEN 279
                        .................12222233333333333333335566666777777777777777775333455*********76666555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-41120276IPR005333Transcription factor, TCP
PROSITE profilePS5136930.671121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.839256274IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MIYRSVKKGL FLTTQPKHES VMEVEEIQSQ KQACKLSRIG NGRLDSTKMS QKDQYPDDEE  60
DGEQQQQQQL QLIRRASAND AGGALGVNNT AAAAGCGGGG NRLRGWHHSS RIIRVSRASG  120
GKDRHSKVWT SKGLRDRRVR LSVTTAIQFY DLQDRLGVDQ PSKAVEWLIK AAADSIAELP  180
SLNSTFPETP KQLSDEKRAS EGTDQQGFDS VELDGDPNNN YQQNQSQHLS LSKSACSSNS  240
ETSKGSGLSL SRSELRVNRD KARERARERA AKEKDQKENE SQINANRHHH HNVNPISQSS  300
SFTELLTGGI GGSVNNNNNT SPTTASSQQQ NEEPNFFHKA TTAAVRPWPA APMDYFNSGL  360
LGPSSSRPPH HHLSGQIQLG SSNSLPQAMQ IPPFSVTNEN HHQEMQHFSF VHDHLIPVTA  420
TQPGPGGGDY FTISSSLGFN RGTLQSNSSP SVFPHIQRFG SSSPIDGSNI NVPFLIGTAP  480
PVENHNHHHH HQFPPGFDGR LHLYYGDGSR HSDSNQKDKG KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-22126180155Putative transcription factor PCF6
5zkt_B2e-22126180155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468037.10.0transcription factor TCP2
RefseqXP_006468038.10.0transcription factor TCP2
RefseqXP_006468039.10.0transcription factor TCP2
RefseqXP_006468040.10.0transcription factor TCP2
RefseqXP_006468041.10.0transcription factor TCP2
RefseqXP_024950830.10.0transcription factor TCP2
RefseqXP_024950831.10.0transcription factor TCP2
TrEMBLA0A067GJ160.0A0A067GJ16_CITSI; Uncharacterized protein
STRINGXP_006468037.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2