PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g009794m

Common Name

CISIN_1g009794mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WRKY

Protein Properties

Length: 526aa MW: 56855 Da PI: 7.9584

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g009794m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	169	228	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +v+++tYeg+Hnh+ orange1.1g009794m 169 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSVLITTYEGTHNHP 228 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-31	154	230	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	162	230	IPR003657	WRKY domain
PROSITE profile	PS50811	28.483	164	230	IPR003657	WRKY domain
SMART	SM00774	1.6E-36	169	229	IPR003657	WRKY domain
Pfam	PF03106	7.1E-27	170	228	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MGEVRQENER LKMYLNRIMK DYQTLQTQFV NIVHQEAKKS TETSNDHDRD KEEVELVSLS 60 LGRFPSDSKK DEKNKTSSLV KEEEQFQEGL SLALDCKFEA SNKSDANESL TNPSPAQSLE 120 EPKEEAGETW PPSKGLNKTM RNGDDEMLQQ SHVKKARVSV RARCDTPTMN DGCQWRKYGQ 180 KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC AEDMSVLITT YEGTHNHPLP VSATAMASTT 240 SAAASMLLSG STSSSSSSSR PGSTAAITAP NNLLMHGLNF YLSDKSKQIY APNSSSSLSA 300 SPLHPTITLD LTTTTAPSSS SSPFSRFTSN YPPAPRYSST NLNFSSTESS SLMSWSNNGL 360 LSYGSCTQPY IKNNQIGSLN MGSRQPADNI FQSYMQKNNP NPNLPPQQSL PAETIAAATK 420 AITADPSFQS ALAVALKSII GNGNGSGVNN NQVNGDNLGQ KLKWGEQFLE TVKGGGCATS 480 YLNKSSSASS HHQPGSLIFL PPNSLPFSTS KSASASPADD REHTD*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MGEVRQENER LKMYLNRIMK DYQTLQTQFV NIVHQEAKKS TETSNDHDRD KEEVELVSLS  60
LGRFPSDSKK DEKNKTSSLV KEEEQFQEGL SLALDCKFEA SNKSDANESL TNPSPAQSLE  120
EPKEEAGETW PPSKGLNKTM RNGDDEMLQQ SHVKKARVSV RARCDTPTMN DGCQWRKYGQ  180
KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC AEDMSVLITT YEGTHNHPLP VSATAMASTT  240
SAAASMLLSG STSSSSSSSR PGSTAAITAP NNLLMHGLNF YLSDKSKQIY APNSSSSLSA  300
SPLHPTITLD LTTTTAPSSS SSPFSRFTSN YPPAPRYSST NLNFSSTESS SLMSWSNNGL  360
LSYGSCTQPY IKNNQIGSLN MGSRQPADNI FQSYMQKNNP NPNLPPQQSL PAETIAAATK  420
AITADPSFQS ALAVALKSII GNGNGSGVNN NQVNGDNLGQ KLKWGEQFLE TVKGGGCATS  480
YLNKSSSASS HHQPGSLIFL PPNSLPFSTS KSASASPADD REHTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	156	230	1	74	WRKY transcription factor 1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269\|PubMed:24884371}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006476643.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-125	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A067GL64	0.0	A0A067GL64_CITSI; Uncharacterized protein
STRING	XP_006476643.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-67	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	orange1.1g009794m

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]