PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009555m
Common NameCISIN_1g009555mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 533aa    MW: 60487.7 Da    PI: 6.3309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009555mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-14335381354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h + Er+RR+++N +f  L++l+P++     +K++ a+++  A+eYIk+L
  orange1.1g009555m 335 TKHFATERQRREQLNGKFKALKDLVPNP-----TKNDRASVVGDAIEYIKEL 381
                        78**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15332395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.132332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-12333385No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13335390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11335381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MRERERERER QRGSRSQTLL LLPDPIFFIN FFYLQNSRLL SLLNKIHPSL IFIHCFFLLQ  60
TDRRQPPDNH PKMYEETGCF DPNSMAEGGD DGISQSVKHH KEDDAAVSAI ELELQKHLAF  120
NVEDTHTQSI SINSNTHSIH DPANQNHQIL PPYEHSHSNW DSGVVSADHM GGFDQNENDQ  180
SQQSFINTDI SSSFAQSQTP PLLNLLQFPR CTTSSMLPPN SSISFTNPDH HFPVPPPTST  240
DVLYDPLFHL NLPPQPQPPL FRELFQSIPH GYSFPASASR AAANSLFGEI GDERDATGAF  300
YEDGDVGVHL DNRVLEFSRD LGCIGRRRET AGKPTKHFAT ERQRREQLNG KFKALKDLVP  360
NPTKNDRASV VGDAIEYIKE LLRTVNELKL LVEKKRCVRE RRKRHRTEDD DEGMKPLVDP  420
ADQSYNSSLR SSWLQRKSKD TEVDVRIIDD EVTIKLVQRK KIDCLLFVSR VLDELQLDLH  480
HVAGGHIGDY YSFLFNTKIY EGSSVYAGSI ANKLIEVMDK QYAAVPPTSC AY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111RERERERERQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.82661e-148flower| fruit| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445526.10.0transcription factor bHLH91 isoform X1
TrEMBLA0A067HC600.0A0A067HC60_CITSI; Uncharacterized protein
TrEMBLV4U9880.0V4U988_9ROSI; Uncharacterized protein
STRINGXP_006445526.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.16e-74bHLH family protein