PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009328m
Common NameCISIN_1g005491mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 538aa    MW: 60332 Da    PI: 7.3665
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009328mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-187693397
                       -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                       +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+v+
  orange1.1g009328m  7 TQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGENGELHVGVR 69
                       4589***********************************************..4499999**996 PP
2Auxin_resp107.61.4e-3596175183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F v+Y+Pr+  s+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk
  orange1.1g009328m  96 ASHAVATQTMFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 175
                        789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.548172IPR003340B3 DNA binding domain
SMARTSM010190.0067172IPR003340B3 DNA binding domain
SuperFamilySSF1019362.49E-22299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-26285IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-16769IPR003340B3 DNA binding domain
CDDcd100174.14E-14870No hitNo description
PfamPF065071.6E-3296175IPR010525Auxin response factor
PfamPF023091.3E-13403514IPR033389AUX/IAA domain
SuperFamilySSF542771.63E-14420501No hitNo description
PROSITE profilePS5174526.665425506IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MNQSTPTQEL VAKDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDTFVFLRGE  60
NGELHVGVRC LARQQSSMPS SVISSQSMHL GVLATASHAV ATQTMFVVYY KPRTSQFIIS  120
LNKYLEAVNN KFAVGMRYKM RFEGEDSPER RFSGTVVGVE DFSPHWKDSK WRSLKVQWDE  180
PASITRPDRV SPWEIEPFVA SATPNLVQPV LAKNKRPRLS MEVPPLDLPS AASAPWSARL  240
AQSHNLTQLS VTAEDKRIDN HVAWHHKHSD FSSNSNFMSR TQSDGEWLTS PRVKFSQQLF  300
QEAIDDNKNI SAWPAHSGHS TPHPSKPNND TLLEQVETGR KTETGTSCRL FGIELINHAT  360
SSAPSEKVPV SSLTTEGHII STISAAADSD GKSDIAKEFK EKKQEQVQVS PKESQSKQSC  420
LTSNRSRTKV QMQGVAVGRA LDLTTLVGYD HLIDELEEMF DIKGQLHTRT KWEIVYTDDE  480
GDMMLVGDDP WHEFCNMVKR IFICSSQDVK KMSPGSKLPM FSIEGEDILL SSDSAEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-971198155355Auxin response factor 1
4ldw_A5e-971198155355Auxin response factor 1
4ldw_B5e-971198155355Auxin response factor 1
4ldx_A6e-971198155355Auxin response factor 1
4ldx_B6e-971198155355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439306.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A067GMP50.0A0A067GMP5_CITSI; Auxin response factor
STRINGXP_006439306.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9