PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009239m
Common NameCISIN_1g009239mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 540aa    MW: 60829 Da    PI: 7.9434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009239mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0791112527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f++  G+C++GdrC+F Hgp
  orange1.1g009239m  91 PCYFYFN-GFCSRGDRCSFLHGP 112
                        79*9**9.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156633.3E-11666No hitNo description
PROSITE profilePS5010310.277635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0086734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.1743763IPR000571Zinc finger, CCCH-type
SMARTSM003560.673962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.51686113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-686111IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-487112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-691113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-591112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEEELQKRNT DCVYFLASPL TCKKGLDCEY RHNEIARLNP RDCWYWLAGN CINPRCGFRH  60
PPLDAHVTEA PSESVSLPCQ SSIPVNKTSI PCYFYFNGFC SRGDRCSFLH GPDGIAPNGK  120
SSKSASAVTD SLLSENKTSA GDGTGSPPTE IRPNPSEAPL KLAVDVRVQP KGHLLQSAPK  180
RIPERRASPQ ISLSEGETVA VVKSDSMVAA EGFMKTKSHL YTDWSSDEHA DDHVEPEERL  240
ESSPGFDVLV DNENRAENLG FEDDSEYLLA TNREHRELNG HFLGYDFEGP IEYDPMYPES  300
EPHEGETYNV HYYLDNEHIL DKVREYPGRA RERILDSMLS RKRKLFPMKV SVDDCNADLR  360
DYLRKRRVVD GHSIVHSTRR HESSRLMGRI QGRHRGLLLH GRLASEFGKN YIESHGHKGT  420
LPNGANQHGW ARHSKSNILR QHHKGKRLLK RKSHLSAISR KPFSSERRSS QTETAFTGPK  480
SLAEIREEKK KAEESGGHFG KVGHLSRTLT DFQGPKPLSE ILKEKRRPGT VSDADTWSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449453KRKSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.93058e-85fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475812.10.0zinc finger CCCH domain-containing protein 34-like
RefseqXP_006475813.10.0zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A067GL000.0A0A067GL00_CITSI; Uncharacterized protein
STRINGXP_006475812.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710