PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g009205m | ||||||||
Common Name | CISIN_1g009155mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 541aa MW: 60121.8 Da PI: 6.4582 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.3e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ orange1.1g009205m 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.6E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-11 | 5 | 45 | No hit | No description |
CDD | cd00202 | 3.70E-17 | 6 | 54 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 7.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 3.0E-9 | 280 | 365 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH 60 RVSKVKSISI NKNKDVKVLK RKSNYDNVVV GGFAPDYNHG YRKVVDEDTS NRSSSGSAIS 120 NSESCVQFGS ADASDLTAQS NVWDSVVPSK KRTCVNRPKQ SPVEKLTKDL YTILHEQQSS 180 YFSGSSEEDL LFESETPMVS VEIGHGSVLI RHPSSIAREE ESEASSLSVE NKQYLVNESY 240 SRSATLHVYN DYQGVNFSSR NMDKAKNFIE QGMQQDQLKR DKSQQEKLQI LGSHTSPLCE 300 IDLNDILNFK EFVGHLTHEE QQQLLKYLPL NDTTVFPDSL NSMFDSLQFK ENISSFQQLL 360 AEGVFDLSFL GVATEDCRTL KRLALSNLTT SNWVEHYQSL KKCKSGTGGS YVSRGPDAAA 420 SNNIINAKRL RDGQNQKFPE AKNIMKSPKR VTVKATYENK EFMENDGSCF SPRSLFALPS 480 DGSSLMLESL HFVDESSDQD LLLDVPSNGS FPQAELLHPS LSFGQQASSS SSAYPNHARP 540 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11134 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440183.1 | 0.0 | GATA transcription factor 26 | ||||
Refseq | XP_006477095.1 | 0.0 | GATA transcription factor 26 | ||||
Swissprot | Q8W4H1 | 1e-164 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A067F0M9 | 0.0 | A0A067F0M9_CITSI; Uncharacterized protein | ||||
STRING | XP_006477095.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006440183.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-153 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g009205m |