PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008967m
Common NameCISIN_1g008967mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 548aa    MW: 61071.6 Da    PI: 6.7891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008967mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11370414554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  orange1.1g008967m 370 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 414
                        8899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.74E-11363418No hitNo description
PROSITE profilePS5088815.04365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16366434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-13369431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9370414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDTAFQLEEA ARANFFQSVM QTFGCTYICL WSYSQQSNCL VFLDGWYHEE NNQPSSSSAS  60
LARRFFHDYC QSFVPIVDYG RLPGLAFKNG QQYIEVNAPE LQRLAFTESQ RQFYQEARIK  120
TAVFMACKSG EIELGLCGGS QGNMEMEMRS LFQEDFKDQQ SPAAAGGRPI QSSSSSSLRS  180
LSMDSPSEYS SLLFNIPTSS HLSETLIDVV PNLQPLTTTT TAASTSTSIS TTAGNTRTNT  240
SLQQAQQAME AFAQLQNIQL PIIQETEQDA MTRAILAVLT SPTSSSSSSQ QQQQQQQQQE  300
QPQQHLAPPK ASAFKNYNLV LAPTSNIRAI SAFRGQSILK RTISYYRRLN IARREYTAGP  360
SRPTSTQLHH MISERKRREK LNESFHALRS LLPPGTKKDK ASLLINTREY LSSLKAQVDE  420
LSRRNQILEA QVLPKAREAA AAASVNAEER VQVRVSPVAE STSEWRMVDI RVIVRGECPA  480
LDLVIRILEF LKGDDNLSLI SVEANTQIAA DSTSFNHVIL RLRIQGNEWD ESAFEEAVRR  540
VVGDLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373378ERKRRE
2374379RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033942.10.0putative transcription factor bHLH041 isoform X3
TrEMBLA0A067EBC10.0A0A067EBC1_CITSI; Uncharacterized protein
STRINGXP_006475471.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-77bHLH family protein