PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g008874m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 551aa MW: 58665 Da PI: 6.3019 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.8e-09 | 374 | 422 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq orange1.1g008874m 374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 422 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-17 | 369 | 440 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.17E-11 | 369 | 426 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 371 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 372 | 439 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 374 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 377 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 551 aa Download sequence Send to blast |
MDMSDKDKFV LEKRNDNPMD YHSPNMSSDW QFSGANLANA ALNLVPTGNP LGVGSSSCSS 60 APMVDSFNQT IWDHPTNSQS LGYCNIDAQH NASSSNALGI RKGSSASLRS CIDRPLDIGW 120 NPASSMIKGG IFLPNAPGMF PQSLSQFPAD SAFIERAARF SSFSGGNFCD MMNTFGTPEP 180 TGLYSRGRGM MQGPQEVFAG NGLKSLSGGQ SQKNEMNVAE VSKDASLSVE HGASNGSTLK 240 NERKGESLVN SHGEAKQGVG ASGGDSDEAE FSGGGGQDEP SAVEGTGGEP SAKGLSSKKR 300 KRNGQDIEFD QAKGGQSSGE AAKDNTENQR KGDHKPSSTG NKSAGKQGKQ GSQTSDPPKE 360 EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS 420 LQRQVEFLSM KLATVNPRLD FNIEELLAKD VLQSRAGPSS TLGFSPDMPL VYPPVHQSQA 480 GLMHGALPGM GNPSDILRRT INSQLTPMTG GFKEPSQVAN VWEDELHNVV QMSYGTSAPS 540 DSQDVNGMIC * |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024956728.1 | 0.0 | transcription factor bHLH49 isoform X1 | ||||
Swissprot | Q9CAA9 | 1e-147 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | A0A2H5QK42 | 0.0 | A0A2H5QK42_CITUN; Uncharacterized protein | ||||
STRING | XP_006484279.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-151 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g008874m |
Publications ? help Back to Top | |||
---|---|---|---|
|