PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008874m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 551aa    MW: 58665 Da    PI: 6.3019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008874mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09374422355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  orange1.1g008874m 374 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 422
                        58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17369440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-11369426No hitNo description
PROSITE profilePS5088815.485371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16372439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6374422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10377427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDMSDKDKFV LEKRNDNPMD YHSPNMSSDW QFSGANLANA ALNLVPTGNP LGVGSSSCSS  60
APMVDSFNQT IWDHPTNSQS LGYCNIDAQH NASSSNALGI RKGSSASLRS CIDRPLDIGW  120
NPASSMIKGG IFLPNAPGMF PQSLSQFPAD SAFIERAARF SSFSGGNFCD MMNTFGTPEP  180
TGLYSRGRGM MQGPQEVFAG NGLKSLSGGQ SQKNEMNVAE VSKDASLSVE HGASNGSTLK  240
NERKGESLVN SHGEAKQGVG ASGGDSDEAE FSGGGGQDEP SAVEGTGGEP SAKGLSSKKR  300
KRNGQDIEFD QAKGGQSSGE AAKDNTENQR KGDHKPSSTG NKSAGKQGKQ GSQTSDPPKE  360
EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS  420
LQRQVEFLSM KLATVNPRLD FNIEELLAKD VLQSRAGPSS TLGFSPDMPL VYPPVHQSQA  480
GLMHGALPGM GNPSDILRRT INSQLTPMTG GFKEPSQVAN VWEDELHNVV QMSYGTSAPS  540
DSQDVNGMIC *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956728.10.0transcription factor bHLH49 isoform X1
SwissprotQ9CAA91e-147BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A2H5QK420.0A0A2H5QK42_CITUN; Uncharacterized protein
STRINGXP_006484279.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-151bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]