PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008830m
Common NameCISIN_1g007393mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 553aa    MW: 61003.3 Da    PI: 5.2092
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008830mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.25.2e-26218365128
                NAM  65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        d+ky++g+r nrat++gyWkatgkd++++s +++l+g+kktLvf+ grapkg++t+Wvmheyr+
  orange1.1g008830m  21 DRKYPNGHRLNRATAAGYWKATGKDRKIKS-GNHLIGMKKTLVFHMGRAPKGKRTNWVMHEYRA 83 
                        89****************************.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.3451106IPR003441NAC domain
SuperFamilySSF1019419.29E-3220106IPR003441NAC domain
PfamPF023651.8E-113082IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKSVLLAKLM SANGSPGICL DRKYPNGHRL NRATAAGYWK ATGKDRKIKS GNHLIGMKKT  60
LVFHMGRAPK GKRTNWVMHE YRATTDDLDG TKPGQSAFVL CRLFKKQDES VEICVEVEPS  120
ESSPTSARSE FALDQTLLDC KPSVSHLAEK VTSNLQECQT KSSEFTATEI DQAMQENFGD  180
VFTKVMSEPL DCTLFPPLHS PFPVEKGSSS TSHSVRNDLT TIDEKGQLPS ESDAYITEFL  240
DSILNTSDEN LFDESDCQWN SFFVSETPSN MTFVKDSGSC SESDAEVAQA RQPNPDITSS  300
LCFKDNIARA SPLKMLRMPE DFRTVTSQNS DNEPSINFRN SCYLDDFCNA DVESCEQDVF  360
SSVSTTGQFH DAFGGFGDSN NHAVGVASRN IVATGIRTRM RNPQSLPYRE GFVNVKQGDA  420
PRRLRLQCKL QVGPVRLQSC MPEEDESKPI VAEGVADAEK ELPVNAATGA MYELKGDSQL  480
ASNENSNISE EQTTDERTKG RLKSTVLMDK DTSNTFRAGH SNRSFAVLFR AAAVVVMFAI  540
LVSTWRCLCL NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-262111080169NO APICAL MERISTEM PROTEIN
1ut4_B9e-262111080169NO APICAL MERISTEM PROTEIN
1ut7_A9e-262111080169NO APICAL MERISTEM PROTEIN
1ut7_B9e-262111080169NO APICAL MERISTEM PROTEIN
3swm_A1e-252111083172NAC domain-containing protein 19
3swm_B1e-252111083172NAC domain-containing protein 19
3swm_C1e-252111083172NAC domain-containing protein 19
3swm_D1e-252111083172NAC domain-containing protein 19
3swp_A1e-252111083172NAC domain-containing protein 19
3swp_B1e-252111083172NAC domain-containing protein 19
3swp_C1e-252111083172NAC domain-containing protein 19
3swp_D1e-252111083172NAC domain-containing protein 19
4dul_A9e-262111080169NAC domain-containing protein 19
4dul_B9e-262111080169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.84850.0callus| flower| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478081.10.0NAC domain-containing protein 62-like isoform X2
TrEMBLA0A067DSD80.0A0A067DSD8_CITSI; Uncharacterized protein
STRINGXP_006441279.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.14e-49NAC domain containing protein 62