PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008756m
Common NameCISIN_1g004499mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 555aa    MW: 61063.1 Da    PI: 6.2367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008756mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000433864231355
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  orange1.1g008756m 386 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 423
                        77899************55......7777778999999988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-5371428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-4384429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MKVVTHIRDV FAALNDISVG HVSSTIQSSV KNTLSLPDLP TKTIPNRWHN LDEVVNRGGP  60
DVQLPMFPYV EKHNDGSYAF SGMQPKIGDG VVNRNEGILL SSAGGVGSAK ILHPKSNVIN  120
LDYQNQMGIH FISDGMSRVE SSGWKDLGVI SEQNGTPFSI NSVIDSINLC SVALQAEKFV  180
ADRTYLASNP LEAVLGEQVK LECTDSCQNG MLHIPEISDI KFEKDLEKLQ NQTELNHLDP  240
SGMSLKFSAV SELHEALGPA FLRKDIYNDR EPENTVDGET VGMPELTSSS HLMFDSGSEN  300
LLDAVVASVC NSGSDVKSER TFCRSMQSLL TTEKKPESSS QMSSKGFSST CPSTCSEQLD  360
RSSEPAKNNK KRARTGENGR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML  420
FLQSITKHAD KLSKCAESKM HQKGNGIHGS NYEQGSSWAV EMGSHLKVCS IVVENLNKNG  480
QMLVEMLCEE CSHFLEIAEA IRSLGLTILK GVTEAHGDKT WICFVVEGQD NRIMHRMDVL  540
WSLVQLLQSK TTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443867.10.0transcription factor EMB1444 isoform X3
RefseqXP_006479559.10.0transcription factor EMB1444 isoform X2
TrEMBLA0A067FM740.0A0A067FM74_CITSI; Uncharacterized protein
STRINGXP_006479559.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-112conserved peptide upstream open reading frame 7