PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g008756m | ||||||||
Common Name | CISIN_1g004499mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 555aa MW: 61063.1 Da PI: 6.2367 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00043 | 386 | 423 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq orange1.1g008756m 386 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 423 77899************55......7777778999999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.88E-5 | 371 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.115 | 373 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-4 | 384 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MKVVTHIRDV FAALNDISVG HVSSTIQSSV KNTLSLPDLP TKTIPNRWHN LDEVVNRGGP 60 DVQLPMFPYV EKHNDGSYAF SGMQPKIGDG VVNRNEGILL SSAGGVGSAK ILHPKSNVIN 120 LDYQNQMGIH FISDGMSRVE SSGWKDLGVI SEQNGTPFSI NSVIDSINLC SVALQAEKFV 180 ADRTYLASNP LEAVLGEQVK LECTDSCQNG MLHIPEISDI KFEKDLEKLQ NQTELNHLDP 240 SGMSLKFSAV SELHEALGPA FLRKDIYNDR EPENTVDGET VGMPELTSSS HLMFDSGSEN 300 LLDAVVASVC NSGSDVKSER TFCRSMQSLL TTEKKPESSS QMSSKGFSST CPSTCSEQLD 360 RSSEPAKNNK KRARTGENGR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML 420 FLQSITKHAD KLSKCAESKM HQKGNGIHGS NYEQGSSWAV EMGSHLKVCS IVVENLNKNG 480 QMLVEMLCEE CSHFLEIAEA IRSLGLTILK GVTEAHGDKT WICFVVEGQD NRIMHRMDVL 540 WSLVQLLQSK TTSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443867.1 | 0.0 | transcription factor EMB1444 isoform X3 | ||||
Refseq | XP_006479559.1 | 0.0 | transcription factor EMB1444 isoform X2 | ||||
TrEMBL | A0A067FM74 | 0.0 | A0A067FM74_CITSI; Uncharacterized protein | ||||
STRING | XP_006479559.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 1e-112 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g008756m |