PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g008724m

Common Name

CISIN_1g008017mg, LOC102621479

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 557aa MW: 60068.8 Da PI: 9.0442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g008724m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	85	105	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H orange1.1g008724m 85 CEICNKGFQRDQNLQLHRRGH 105 *******************88 PP
2	zf-C2H2	11.7	0.0008	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + orange1.1g008724m 159 WKCEKCSKKYAVQSDWKAHSKIC 181 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.6E-5	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.8E-7	82	105	No hit	No description
PROSITE profile	PS50157	10.824	83	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	124	154	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.9E-4	147	180	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.8E-7	154	179	No hit	No description
SMART	SM00355	140	159	179	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP 60 GNPDPDAEVI ALSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKVER 120 KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI 180 CGTREYKCDC GKLFSRRDSF ITHRAFCDVL AEESARTITV NPLFSPSQQQ PNSSATHMLN 240 FPSHHHHQLQ SQGLQALQLQ AVKIEDNNQQ HHIPPWLACP SSIDLSSQLF SGNIFSRSLL 300 HNENQSASPS PNPNSTSFAP FEPPGTTGSQ HTSATALLQK AAQMGATMST QPSALPAPVL 360 RVPVPHQTHH MPAGSASTAG AAGSSSGLGL SSREDLASGF VHNNLSSFGN KAAAAANPAY 420 MEQFAASTTT TTTGPGTAPS LLHDMMMSSF SCTNGFDGSS SSFDDALNGI LNPKGYGDFH 480 HAQLSRNNHE TRDNNGGGAG GSNAGGSDGL TRDFLGLKTF PHSHRDFVNI AGLDQINPSS 540 SSTFGPQNQN PRTWQG*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP  60
GNPDPDAEVI ALSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKVER  120
KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI  180
CGTREYKCDC GKLFSRRDSF ITHRAFCDVL AEESARTITV NPLFSPSQQQ PNSSATHMLN  240
FPSHHHHQLQ SQGLQALQLQ AVKIEDNNQQ HHIPPWLACP SSIDLSSQLF SGNIFSRSLL  300
HNENQSASPS PNPNSTSFAP FEPPGTTGSQ HTSATALLQK AAQMGATMST QPSALPAPVL  360
RVPVPHQTHH MPAGSASTAG AAGSSSGLGL SSREDLASGF VHNNLSSFGN KAAAAANPAY  420
MEQFAASTTT TTTGPGTAPS LLHDMMMSSF SCTNGFDGSS SSFDDALNGI LNPKGYGDFH  480
HAQLSRNNHE TRDNNGGGAG GSNAGGSDGL TRDFLGLKTF PHSHRDFVNI AGLDQINPSS  540
SSTFGPQNQN PRTWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	155	216	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-34	155	216	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	121	KLKQRTNKVERKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1886	0.0	flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475907.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-121	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A067GK77	0.0	A0A067GK77_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PZ61	0.0	A0A2H5PZ61_CITUN; Uncharacterized protein
STRING	XP_006475907.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-105	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	orange1.1g008724m
Entrez Gene	102621479

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]