PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g008608m | ||||||||
Common Name | CISIN_1g004792mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 561aa MW: 62921.8 Da PI: 9.3816 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.2e-18 | 18 | 82 | 33 | 99 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++l +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v+v+r+ orange1.1g008608m 18 TQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRA 82 348999*********************************************..449999*****996 PP | |||||||
2 | Auxin_resp | 124.7 | 6.3e-41 | 107 | 189 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW++SkWr+Lk orange1.1g008608m 107 AWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMESIKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWRDSKWRCLK 189 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.857 | 1 | 83 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-6 | 2 | 83 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.81E-25 | 7 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-27 | 8 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.2E-16 | 16 | 82 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-13 | 16 | 81 | No hit | No description |
Pfam | PF06507 | 4.0E-38 | 107 | 189 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MLMSVFHPWL DMSRQPPTQE LAAKDLHGNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV 60 AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA VSTGTMFTVY 120 YKPRTSPSEF IVPYDQYMES IKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GIEDADPQRW 180 RDSKWRCLKV RWDETSTIPR PERVSLWKIE PALAPPALNS LPMPRPKRPR SNMLPSSPDS 240 SVLTREGSSK LNVDPSSATG FSRVLQGQEF STLRGNFAER ESNESDTAEK SVVWPPSLDD 300 EKIDVVSASR RYGSENWVPP GRHEPVYTDL LSGFGANADP SHGFSSPFAD AVPVRKSVLD 360 QEGKFNLVAR PWSLMPSGPS LKMPESNAKV PVQGGDVNYQ VRGNVRYGGF GDYPMLNGNR 420 VEHSHGNWLM PPLPPSNFEN SAHSRELMPK SAMVQDQEAG KSKDCKLFGI PLFSNHVMPE 480 PVVSHRNTMN EPAGNLDQQF RAFESDQKSD HSKSSKLADD NQVFNEHEKP SQPSQTHTKD 540 VRSKTQCGST RSCTKVPLPH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-103 | 8 | 211 | 151 | 354 | Auxin response factor 1 |
4ldw_A | 1e-103 | 8 | 211 | 151 | 354 | Auxin response factor 1 |
4ldw_B | 1e-103 | 8 | 211 | 151 | 354 | Auxin response factor 1 |
4ldx_A | 1e-103 | 8 | 211 | 151 | 354 | Auxin response factor 1 |
4ldx_B | 1e-103 | 8 | 211 | 151 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3749 | 0.0 | callus| flower| fruit| leaf| root| seed| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN600520 | 0.0 | JN600520.1 Citrus sinensis auxin-response factor (ARF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275789.1 | 0.0 | auxin-response factor | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A067E8A2 | 0.0 | A0A067E8A2_CITSI; Auxin response factor | ||||
STRING | XP_006436945.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g008608m |