PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008254m
Common NameCISIN_1g008254mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 573aa    MW: 63924.3 Da    PI: 6.2957
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008254mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14.2e-28330384156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  orange1.1g008254m 330 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 384
                        5689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.8E-1216176No hitNo description
SuperFamilySSF521721.29E-916147IPR011006CheY-like superfamily
PROSITE profilePS5011017.14719145IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.58E-621144No hitNo description
PROSITE profilePS5129415.114327386IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-27328387IPR009057Homeodomain-like
SuperFamilySSF466891.43E-18329387IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-25330384IPR006447Myb domain, plants
PfamPF002491.0E-8333382IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MVCTANDLSA WKDFPKGLRV LLLDQDSSAA AELKFKLEAM DYIVSTFYNE NEALSAFSDK  60
PENFHVAIVE VTTSNTDGSF KFLETAKDLP TIITSNIHCL STMMKCIAIM VMNQLFDNNF  120
QLGAVEFLRK PLSEDKLRNL WQHVVHKAFN AGGSALSDSL KPVKESVVSM LHLKLENGES  180
KNEKSENTEY VLVPQQSDNE QSVPNDKYPA PSTPQLKQGG RLLDDIDCQD NTNFSTEKES  240
AEQDGESKFV ETTCGNSIAE GTLQEDKPQR PRETIVKEEH DPTNGSKTEC NMLPLPYEKD  300
NLKGSNCVIE NPSKASGLQN SCGNKANRKK MKVDWTPELH KKFVQAVEQL GVDQAIPSRI  360
LELMKVEGLT RHNVASHLQK YRMHRRHILP KEDDRKWPHA RDQMLRNYYP HKPIMAFPPY  420
HSNHLVPTGP VYPVWGAPSN HLAAVQMWAP PGYPPWQQAE SWNWKPYPGM PADAWGCPVM  480
PLPNGPYSSF PQGASGYHNS GVDDNSYAMP QNSVDLHPAE EVIDKVVKEA ISKPWLPLPL  540
GLKPPSADSV LAELSRQGIS TIPPRINGSH PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-16335384655Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176380.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436789.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485404.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_006485405.10.0two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-151APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A067DLQ30.0A0A067DLQ3_CITSI; Uncharacterized protein
STRINGXP_006485404.10.0(Citrus sinensis)
STRINGXP_006436789.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-153ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]