PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008125m
Common NameCISIN_1g007393mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 578aa    MW: 64486.9 Da    PI: 4.5908
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008125mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.1e-33998189
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
                       lp GfrF+Ptdeelv++yL+ k++g++ e+ +vi+e+d++k ePwdLp  + +k++++ew+fF+++d+ky++g+r nrat++gyWkatgk 
  orange1.1g008125m  9 LPLGFRFRPTDEELVDFYLRMKINGHNDEV-SVISEIDVCKREPWDLPdlSVIKTKDREWFFFCPQDRKYPNGHRLNRATAAGYWKATGKR 98
                       699************************999.99**************9644889999********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-454131IPR003441NAC domain
PROSITE profilePS5100531.849164IPR003441NAC domain
PfamPF023651.9E-1610107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAVLSLNSLP LGFRFRPTDE ELVDFYLRMK INGHNDEVSV ISEIDVCKRE PWDLPDLSVI  60
KTKDREWFFF CPQDRKYPNG HRLNRATAAG YWKATGKRTN WVMHEYRATT DDLDGTKPGQ  120
SAFVLCRLFK KQDESVEICV EVEPSESSPT SARSEFALDQ TLLDCKPSVS HLAEKVTSNL  180
QECQTKSSEF TATEIDQAMQ ENFGDVFTKV MSEPLDCTLF PPLHSPFPVE KGSSSTSHSV  240
RNDLTTIDEK GQLPSESDAY ITEFLDSILN TSDENLFDES DCQWNSFFVS ETPSNMTFVK  300
DSGSCSESDA EVAQARQPNP DITSSLCFKD NIARASPLKM LRMPEDFRTV TSQNSDNEPS  360
INFRNSCYLD DFCNADVESC EQDVFSSVST TGQFHDAFGG FGDSNNHAVG VASRNIVATG  420
IRTRMRNPQS LPYREGFVNV KQGDAPRRLR LQCKLQVGPV RLQSCMPEED ESKPIVAEGV  480
ADAEKELPVN AATGAMYELK GDSQLASNEN SNISEEQTTD ERTKGRLKST VLMDKDTSNT  540
FRAGHSNRSF AVLFRAAAVV VMFAILVSTW RCLCLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-32813516169NO APICAL MERISTEM PROTEIN
1ut4_B5e-32813516169NO APICAL MERISTEM PROTEIN
1ut7_A5e-32813516169NO APICAL MERISTEM PROTEIN
1ut7_B5e-32813516169NO APICAL MERISTEM PROTEIN
4dul_A5e-32813516169NAC domain-containing protein 19
4dul_B5e-32813516169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.84850.0callus| flower| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478081.10.0NAC domain-containing protein 62-like isoform X2
TrEMBLA0A067DZR60.0A0A067DZR6_CITSI; Uncharacterized protein
STRINGXP_006441279.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.17e-72NAC domain containing protein 62