PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g008017m

Common Name

CISIN_1g008017mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 582aa MW: 63099.4 Da PI: 8.7934

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g008017m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	110	130	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H orange1.1g008017m 110 CEICNKGFQRDQNLQLHRRGH 130 *******************88 PP
2	zf-C2H2	11.6	0.00084	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + orange1.1g008017m 184 WKCEKCSKKYAVQSDWKAHSKIC 206 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	107	130	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.81E-7	107	130	No hit	No description
SMART	SM00355	0.11	108	130	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	108	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	110	130	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	149	179	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.0E-4	172	205	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.81E-7	179	204	No hit	No description
SMART	SM00355	140	184	204	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP 60 GNPGINFSLF NFIFFQFWGL IDFVLFESDP DAEVIALSPK SLMATNRFLC EICNKGFQRD 120 QNLQLHRRGH NLPWKLKQRT NKVERKKVYV CPEPTCVHHD PSRALGDLTG IKKHFSRKHG 180 EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGKLFS RRDSFITHRA FCDVLAEESA 240 RTITVNPLFS PSQQQPNSSA THMLNFPSHH HHQLQSQGLQ ALQLQAVKIE DNNQQHHIPP 300 WLACPSSIDL SSQLFSGNIF SRSLLHNENQ SASPSPNPNS TSFAPFEPPG TTGSQHTSAT 360 ALLQKAAQMG ATMSTQPSAL PAPVLRVPVP HQTHHMPAGS ASTAGAAGSS SGLGLSSRED 420 LASGFVHNNL SSFGNKAAAA ANPAYMEQFA ASTTTTTTGP GTAPSLLHDM MMSSFSCTNG 480 FDGSSSSFDD ALNGILNPKG YGDFHHAQLS RNNHETRDNN GGGAGGSNAG GSDGLTRDFL 540 GLKTFPHSHR DFVNIAGLDQ INPSSSSTFG PQNQNPRTWQ G*

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP  60
GNPGINFSLF NFIFFQFWGL IDFVLFESDP DAEVIALSPK SLMATNRFLC EICNKGFQRD  120
QNLQLHRRGH NLPWKLKQRT NKVERKKVYV CPEPTCVHHD PSRALGDLTG IKKHFSRKHG  180
EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGKLFS RRDSFITHRA FCDVLAEESA  240
RTITVNPLFS PSQQQPNSSA THMLNFPSHH HHQLQSQGLQ ALQLQAVKIE DNNQQHHIPP  300
WLACPSSIDL SSQLFSGNIF SRSLLHNENQ SASPSPNPNS TSFAPFEPPG TTGSQHTSAT  360
ALLQKAAQMG ATMSTQPSAL PAPVLRVPVP HQTHHMPAGS ASTAGAAGSS SGLGLSSRED  420
LASGFVHNNL SSFGNKAAAA ANPAYMEQFA ASTTTTTTGP GTAPSLLHDM MMSSFSCTNG  480
FDGSSSSFDD ALNGILNPKG YGDFHHAQLS RNNHETRDNN GGGAGGSNAG GSDGLTRDFL  540
GLKTFPHSHR DFVNIAGLDQ INPSSSSTFG PQNQNPRTWQ G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-34	180	241	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-34	180	241	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	146	KLKQRTNKVERKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1886	1e-104	flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475907.1	0.0	protein indeterminate-domain 7 isoform X1
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A067GKG2	0.0	A0A067GKG2_CITSI; Uncharacterized protein
STRING	XP_006450860.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-99	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	orange1.1g008017m

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]