PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007974m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 584aa    MW: 64649.8 Da    PI: 7.8442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007974mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.59e-17336382455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  orange1.1g007974m 336 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 382
                        6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-17325386No hitNo description
SuperFamilySSF474592.36E-20330395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-19331387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MNPCIPDWNF EGDIPISNQM KPMGQDNELV ELLWQNGHVV LSSQAQTQRK PSLNHNEPRQ  60
VQKQTLRGSG SCGNSSNLIQ DDETVSWIHC PIEDSFEKDF YSQLFSELPP SGPMEVDKHT  120
RQLREEKMVK FDPPGAVTSS QHPNVNHSVV PELQRNAMPP PRFEVHDAAP QNKNLGDLGK  180
LVNFSQSTAP PKGELGPCSG QFDRKRSGNL TQGEVRECSM MTVGSSHCGS NQVAYDLDMS  240
RASSSGLNDD VRKVISPSER GKTETIEPTV TSSSGGSGSS FNRTSKQSTG DNSLKRKSRD  300
AVDSECQSEA AGFESGAGNK TAQRSGSCRR SRAAEVHNLS ERRRRDRINE KMRALQELIP  360
HCNKTDKASM LDEAIEYLKS LQLQLQMSQV MWMGSGMAPL MFPGMQHYMS RMGMGMGPPP  420
LPSVTNPMHF SRVPLVDQSM SMAQAQNRAV MCQASVLNPV NYQNQMQNSN FTEQYARYMG  480
FHPMQANSQP MNMFRFGSPT MQNQIVSLPS SSCVPFSGGA ATDNSPLSGK MVGERRRLIK  540
WLWSPIFIMG RSQEGESCSS WRIFGPFLSC IAYDINALSI AWL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485007.10.0transcription factor PIF4-like isoform X1
TrEMBLA0A2H5QEB90.0A0A2H5QEB9_CITUN; Uncharacterized protein
STRINGXP_006485007.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.16e-44phytochrome interacting factor 3-like 6