PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g007940m | ||||||||
Common Name | CISIN_1g007940mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 585aa MW: 65446.8 Da PI: 6.0617 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.6 | 3.1e-24 | 200 | 253 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl orange1.1g007940m 200 KARVVWSIDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 77.2 | 5.9e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 vl+vdD+ + +++l+++l+k y ev+++ +++al ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + + orange1.1g007940m 20 VLVVDDDLAWLKILEKMLKKCSY-EVTTCGLARDALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGV 109 89*********************.***************999999**********************6644.8******************* PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ ++el++ orange1.1g007940m 110 QHGACDYLLKPIRMKELRN 128 ****************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-43 | 17 | 151 | No hit | No description |
SuperFamily | SSF52172 | 1.42E-34 | 17 | 145 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.6E-31 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.213 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.4E-23 | 20 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.14E-29 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 7.88E-17 | 198 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 198 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-21 | 200 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.3E-7 | 202 | 252 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 585 aa Download sequence Send to blast |
MENGFSSPRN DTFNPAGLRV LVVDDDLAWL KILEKMLKKC SYEVTTCGLA RDALSLLRER 60 KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKKIHE VRDIENIEGF ESIHMTRSGS DQSVDGPLLT GEDLTSVRKR 180 KDAENRHDDR DCGDASSTKK ARVVWSIDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLTRLQK DELKTSVGGI KQKDSPSKDS AASFGIQNSI TVHHHNDVSN 300 GGYRFSGSNS VVQNVDAKSL EGDVKGIDTI PVTGHKRVLT VDIPNSHKAR CSQIGFNGSF 360 VPGHSDVNFT SFDSAIPTQP WSEVSETQFQ HEHKPLRLEN DFTQLPLPGP RHHIQVDCIQ 420 SGPSASSKPS VVDKDNLKPF DCTYKSNYPN AIPIGSAVDT FPVQTTSPIV NHQPFEPIAR 480 TTSSMKSQGL NLSCIPDLEA AQRNINWGVG SSLTSLDEDL QLCWLQGDCF AMNLGLQDIN 540 FSEYNDPALN SEVPFHLYDT MRFDYEHYYD PTECPIIDQG LFIA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 196 | 258 | 1 | 63 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in roots and stems. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484016.1 | 0.0 | two-component response regulator ARR11 isoform X1 | ||||
Refseq | XP_006484017.1 | 0.0 | two-component response regulator ARR11 isoform X2 | ||||
Swissprot | Q9FXD6 | 1e-148 | ARR11_ARATH; Two-component response regulator ARR11 | ||||
TrEMBL | A0A067GQQ8 | 0.0 | A0A067GQQ8_CITSI; Uncharacterized protein | ||||
STRING | XP_006484017.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8066 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-150 | response regulator 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g007940m |
Publications ? help Back to Top | |||
---|---|---|---|
|