 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | orange1.1g007938m | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
| Family | NAC | ||||||||
| Protein Properties | Length: 585aa MW: 66345.7 Da PI: 6.2652 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 180.1 | 5.7e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePw+Lp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd+
orange1.1g007938m 6 LPPGFRFHPTDEELVAYYLKRKINGREIEL-EIIPEVDLYKCEPWELPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDR 96
79****************************.99***************6434555777********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v s +++ vg+kktLv+y+grap+g +t+Wvmheyrl
orange1.1g007938m 97 KVNS-QTRSVGMKKTLVYYRGRAPHGIRTHWVMHEYRL 133
****.9999***************************98 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 4.71E-64 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.367 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 6.0E-30 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 585 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWE LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH 120 GIRTHWVMHE YRLDERECET DSGLQDAYAL CRVFKKSAIG PKIVEHYAPT PITTANQMTH 180 HPNSPSIEYY SESSDYPMPY DRCLPSNIGT ESSNQAHDGK WTQFLSEDSF GLNSTTPFSN 240 YATTPYHPCK IDVALECAKL QHRLSLPPLE VEDFSHQIGV TDFKMQHHSH ALTQQELMIN 300 QSSGVQDPWG GNYSNAAADD FSFMMTSDDN HYYDPSNNNN NNGMTSVRYN DKLWEGFNSR 360 SIEIGYLDED VKSERMVENL RWVGMSNKDL DKLNDFSLGF IDDEPNKNHL EEEIGDGTLA 420 SSPSFEVVEE IKVNHGMFVS TRQAADTFFH QIVPSQIVQV QLNRAEVANN LSINAKAEKF 480 TGTFMKPWKE IASAVVCMLV LVIMHGFYYL GENLDNGKLN IDDRFNVKEK GCSSKKIKEG 540 DLLVNIRGGR GDNFIVCLKK IGLFLTISLA LCTMWANHVV VSSA* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 2e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 2e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 2e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00212 | DAP | Transfer from AT1G65910 | Download |
| |||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006430405.1 | 0.0 | NAC domain-containing protein 86 | ||||
| TrEMBL | V4SX98 | 0.0 | V4SX98_9ROSI; Uncharacterized protein | ||||
| STRING | XP_006430405.1 | 0.0 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM10112 | 26 | 32 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-146 | NAC domain containing protein 28 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | orange1.1g007938m |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|