PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g007898m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 586aa MW: 63918.1 Da PI: 9.4184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g007898m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H orange1.1g007898m 93 FVCEICNKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	12.5	0.00045	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ orange1.1g007898m 169 WKCDKCSKRYAVQSDWKAHSKTC 191 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.14E-7	92	115	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	92	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	93	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	93	115	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	115	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	134	164	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-4	157	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.14E-7	164	189	No hit	No description
SMART	SM00355	140	169	189	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 586 aa Download sequence Send to blast
MMKGLIFHQQ QQQQQQVLEE NMSNLTSQSG TEASVSSGNI RGAETTNHQQ YFATPPTQAQ 60 PPAKKKRNLP GNPDPDAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK 120 LKQRTSKEIR KKVYVCPEPN CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV 180 QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESTRAITG TNPILSSSSH 240 HQPGIVAGAS SHVNLQIPQF NPQDFSAFSL KKEQQSYSLR QEMPPWLGSQ QPSILGSAVP 300 GLGQPPSSSH TVDHLSSPSS SIFNTRLHQD HQFTQTTHQD LTRNDHPANP NPSLGPTLSV 360 PHTNYHQAMA SAFPHMSATA LLQKAAQMGA TMSSSKASTA TGNSSSSSSP AHHAALTRPH 420 QQPPPPQQAH VSATPEHPAG NNKTKTTTGF GLNLSSREGV VHGLTPFGTK TSGGGSSGPF 480 IQEMLMNTSF SSGYAAASPF DDALTFGGVF NSKKEPHLNH SFNESSSLSR TSGINDHGEE 540 MTRDFLGLRA LSQTDILNIA GLGNCIDTRS SHEQQLNHSQ KPWQG*

Sequence ? help Back to Top

Protein Sequence Length: 586 aa Download sequence Send to blast

MMKGLIFHQQ QQQQQQVLEE NMSNLTSQSG TEASVSSGNI RGAETTNHQQ YFATPPTQAQ  60
PPAKKKRNLP GNPDPDAEVI ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSKEIR KKVYVCPEPN CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESTRAITG TNPILSSSSH  240
HQPGIVAGAS SHVNLQIPQF NPQDFSAFSL KKEQQSYSLR QEMPPWLGSQ QPSILGSAVP  300
GLGQPPSSSH TVDHLSSPSS SIFNTRLHQD HQFTQTTHQD LTRNDHPANP NPSLGPTLSV  360
PHTNYHQAMA SAFPHMSATA LLQKAAQMGA TMSSSKASTA TGNSSSSSSP AHHAALTRPH  420
QQPPPPQQAH VSATPEHPAG NNKTKTTTGF GLNLSSREGV VHGLTPFGTK TSGGGSSGPF  480
IQEMLMNTSF SSGYAAASPF DDALTFGGVF NSKKEPHLNH SFNESSSLSR TSGINDHGEE  540
MTRDFLGLRA LSQTDILNIA GLGNCIDTRS SHEQQLNHSQ KPWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-34	165	232	3	70	Zinc finger protein JACKDAW
5b3h_F	8e-34	165	232	3	70	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	131	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-131	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024036713.1	0.0	protein indeterminate-domain 7
Refseq	XP_024036715.1	0.0	protein indeterminate-domain 7
Refseq	XP_024036716.1	0.0	protein indeterminate-domain 7
Refseq	XP_024036717.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-120	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	V4UKA4	0.0	V4UKA4_9ROSI; Uncharacterized protein
STRING	XP_006426554.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-119	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	orange1.1g007898m

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]