PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g007883m | ||||||||
Common Name | CISIN_1g001971mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SBP | ||||||||
Protein Properties | Length: 587aa MW: 64688 Da PI: 6.9044 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.4 | 7.7e-42 | 149 | 226 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ orange1.1g007883m 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 226 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-34 | 142 | 211 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.385 | 147 | 224 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.27E-39 | 148 | 229 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.2E-30 | 150 | 223 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
METRFRGEAH HFYGMNSMDL RAVGKKTLEW DLNDWKWDGD LFIASKLNPA PNENIGRQFF 60 PLAVGNSSNS SSSCSDEVNL GIENGKREVE KKRRAVVVED HNSYEVAAGG LSLKLGGNGH 120 PLSEREMGNW AGSSGKKTKF GGGSSSRAVC QVEDCGADLS NAKDYHRRHK VCEMHSKASR 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTNPDAVA NGSSPNNDQT 240 SGYLLISLLR ILSNMHSSRS DQRTDQDLLS HLLRGLASPA GENGGRGISG LLQEHQDMLN 300 ERTSAGNSEV VQAFLANGQG CPTPFRQQLN ATVSEMPQQV SLPHDARGAE DQDGNVAQIK 360 MNNFDLNDVY IDSDDGTEDV ERSPVPANLG TSSIDCPSWV RQDSQQSSPP QTSGNSDSAS 420 AQSPSSSSDA QSRTDRIVFK LFGKEPNDFP LVLRAQILDW LSHSPSDMES YIRPGCVILT 480 IYLRQAEAAW EELCCDLTFS LSRLLDLSND SFWTSGWVYA RVQHQIAFIY NGQVVLDTSL 540 PPRSNNYSKI LSVKPIAVPA SERAQFFVKG INLGRSATRS PLFILE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-32 | 143 | 223 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024948833.1 | 0.0 | LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A067HFN9 | 0.0 | A0A067HFN9_CITSI; Uncharacterized protein | ||||
STRING | XP_006444595.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 1e-169 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g007883m |
Publications ? help Back to Top | |||
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