PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007797m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 590aa    MW: 65295.6 Da    PI: 7.8442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007797mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.49.1e-17345391455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  orange1.1g007797m 345 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 391
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.34E-17334395No hitNo description
SuperFamilySSF474591.44E-20339403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20345399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-14345391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MQQIFVSSAM NPCIPDWNFE GDIPISNQMK PMGQDNELVE LLWQNGHVVL SSQAQTQRKP  60
SLNHNEPRQV QKQTLRGSGS CGNSSNLIQD DETVSWIHCP IEDSFEKDFY SQLFSELPPS  120
GPMEVDKHTR QLREEKMVKF DPPGAVTSSQ HPNVNHSVVP ELQRNAMPPP RFEVHDAAPQ  180
NKNLGDLGKL VNFSQSTAPP KGELGPCSGQ FDRKRSGNLT QGEVRECSMM TVGSSHCGSN  240
QVAYDLDMSR ASSSGLNDDV RKVISPSERG KTETIEPTVT SSSGGSGSSF NRTSKQSTGD  300
NSLKRKSRDA VDSECQSEAA GFESGAGNKT AQRSGSCRRS RAAEVHNLSE RRRRDRINEK  360
MRALQELIPH CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGMAPLMFPG MQHYMSRMGM  420
GMGPPPLPSV TNPMHFSRVP LVDQSMSMAQ AQNRAVMCQA SVLNPVNYQN QMQNSNFTEQ  480
YARYMGFHPM QANSQPMNMF RFGSPTMQNQ IVSLPSSSCV PFSGGAATDN SPLSGKMVGE  540
RRRLIKWLWS PIFIMGRSQE GESCSSWRIF GPFLSCIAYD INALSIAWL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387762.20.0transcription factor PIF4-like isoform X2
TrEMBLA0A2H5QE640.0A0A2H5QE64_CITUN; Uncharacterized protein
STRINGXP_006485007.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.13e-52phytochrome interacting factor 3-like 6