PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007770m
Common NameCISIN_1g002869mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 591aa    MW: 65113.8 Da    PI: 5.939
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007770mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.4e-21135190156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  orange1.1g007770m 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190
                        688999***********************************************999 PP
2START2046.1e-643425671206
                        HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
              START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                        ela++a++elvk+a+ +ep+W +s      + +n +e+l++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    +
  orange1.1g007770m 342 ELALAAMDELVKMAQTDEPLWIRSFegsgrQVLNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDPN-RWAEMFPcmiaR 432
                        5899********************99*99999***********99989*9*9***************************.************ PP

                        EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
              START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +v +++lpSg+++++++ng+sk
  orange1.1g007770m 433 TATTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSK 524
                        ****************************************************************999************************* PP

                        EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        vtwveh++++++++h+l+++l+ sg+ +ga++wvatlqrqce+
  orange1.1g007770m 525 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567
                        *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-21118192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21127192IPR009057Homeodomain-like
PROSITE profilePS5007117.248132192IPR001356Homeobox domain
SMARTSM003892.2E-17133196IPR001356Homeobox domain
CDDcd000861.31E-18134192No hitNo description
PfamPF000461.3E-18135190IPR001356Homeobox domain
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084844.451333570IPR002913START domain
SuperFamilySSF559611.79E-34335567No hitNo description
CDDcd088751.26E-129337566No hitNo description
SMARTSM002342.3E-47342567IPR002913START domain
PfamPF018529.4E-56342567IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSFGGFLENN ISTSSGGGGA RIVADISYTN NDNNNNNNMP TTTTLAHPRL LSSTPQPLSK  60
SMFNSPGLSL ALQQPNIDNQ GGGDLQLQRM GESFEGIIGR RSREDLLEHE SRSGSDNMDG  120
ASGDDLDAAD NPPRKKRYHR HTPQQIQELE SLFKECPHPD EKQRLELSKR LCLETRQVKF  180
WFQNRRTQMK TQLERHENSL LRQENDKLRA ENMSIRDAMR NPICTNCGGP AIIGDISLEE  240
QHLRIENARL KDELDRVCAL AGKFLGRPVS SMGPPPMPNS SLELGVGTIN GFGGLSSTVT  300
TTLPADFGTG ISNALPVVMP PNRSGPGVTG LDRSIERSMF LELALAAMDE LVKMAQTDEP  360
LWIRSFEGSG RQVLNHEEYL RTFTPCIGLK PNGFVTEASR ETGMVIINSL ALVETLMDPN  420
RWAEMFPCMI ARTATTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPVREV NFLRFCKQHA  480
EGVWAVVDVS IDTIRETSGA PAFVNCRRLP SGCVVQDMPN GYSKVTWVEH AEYDESQVHQ  540
LYKPLIISGM GFGAQRWVAT LQRQCECLAI LMSTSVSARD HTGIYDINTL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.12171e-138fruit| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445143.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_006491020.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A067HDN50.0A0A067HDN5_CITSI; Uncharacterized protein
STRINGXP_006491020.10.0(Citrus sinensis)
STRINGXP_006445143.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]