PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007660m
Common NameCISIN_1g007660mg, LOC102607441
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 595aa    MW: 66302.1 Da    PI: 6.7926
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007660mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.8e-095135511854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +F++  ++yp+ +e+  LA+k gLt +qV++WF N R +
  orange1.1g007660m 513 MFQNflHPYPKDAEKHLLAMKSGLTRTQVSNWFINARVR 551
                        5887779******************************88 PP
2BELL84.71.1e-27384454172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +rq++++kka+Ll ll++Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS+ +++L+++i++qi
  orange1.1g007660m 384 QRQAVEAKKAQLLALLQMVDDRYNQCLDEIHTVVSAFHAATELDP-QVHARFALHTISFLYKNLRERISSQI 454
                        6899*****************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.5E-30303452IPR006563POX domain
PfamPF075268.2E-27309451IPR006563POX domain
PROSITE profilePS5007111.175492555IPR001356Homeobox domain
SMARTSM003894.5E-6495559IPR001356Homeobox domain
CDDcd000862.64E-11495556No hitNo description
SuperFamilySSF466891.88E-15496562IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-26498561IPR009057Homeodomain-like
PfamPF059209.8E-15512551IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MENDMFNNPI NRASRYSILV DGTPNSLIRT SSFNFDSQKH PDPALAGFPS FSALQGEPIS  60
DIHTNLNVTN NSRVFDSDAL VTSLGRNGMR DFSVGRSGPM DNINFQEQLE DGTPISSTSF  120
ATLLAARNGL QENLNNLAIS VPSIYPVDVL RNDIANHCSN DLNSSFETSA SCGYDEVLGN  180
VNSKWVFDEA HAAPKFDGKT LLRTGFQPYS SIGSLHPSEW ISSNDADVTA NRYGSSNYSN  240
ELSLSLATYH TAITGGNNIP DQCSEVSFSG ATHRCLNATR LCSEQASCSS NELSLSFGSH  300
RPAHFLQFIS GSTYLHAVQE ILAQIASYSL ENLDDMSYLG VRKIGDNIPP SSSFITGKGR  360
PPMNSDEFPN VDGCFEVQMN PSQQRQAVEA KKAQLLALLQ MVDDRYNQCL DEIHTVVSAF  420
HAATELDPQV HARFALHTIS FLYKNLRERI SSQILAMGAH FDSKSTRGKD TVMVDSFIKE  480
QWALQQLKKK EHQIWRPQRG LPEKSVSVLR AWMFQNFLHP YPKDAEKHLL AMKSGLTRTQ  540
VSNWFINARV RLWKPMIEEM YREVNRRKAQ GSKEGIDSSR RSQISISNQR FNMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-15501562566Homeobox protein Meis2
3k2a_B6e-15501562566Homeobox protein Meis2
4xrs_A5e-15501558158Homeobox protein Meis1
4xrs_B5e-15501558158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945593e-38BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015385015.10.0homeobox protein ATH1
RefseqXP_015385016.10.0homeobox protein ATH1
RefseqXP_024952981.10.0homeobox protein ATH1
RefseqXP_024952982.10.0homeobox protein ATH1
SwissprotP487311e-115ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A067GMY90.0A0A067GMY9_CITSI; Uncharacterized protein
TrEMBLA0A2H5PZ720.0A0A2H5PZ72_CITUN; Uncharacterized protein
STRINGXP_006475948.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-107homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]