PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g007514m | ||||||||
Common Name | CISIN_1g007514mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRF | ||||||||
Protein Properties | Length: 601aa MW: 65096.3 Da PI: 7.6877 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.8 | 4.6e-24 | 232 | 276 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e orange1.1g007514m 232 DPEPGRCRRTDGKKWRCSRDAVTDQKYCERHINRGRHRSRKPVEG 276 79****************************************985 PP | |||||||
2 | QLQ | 50.8 | 5e-18 | 164 | 200 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q +L++Q+l+yKy+++n+PvP++Ll +++k orange1.1g007514m 164 GPFTPSQRIELEHQALIYKYILSNAPVPSNLLIPLKK 200 59*******************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.6E-9 | 164 | 200 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.541 | 165 | 200 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.0E-12 | 165 | 198 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.057 | 232 | 276 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-20 | 233 | 275 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MDFGVLGLEG LSGLENGAPS QLSIYPETMP KAVGSSSRFV KKERSEPDEG DKPVSKMPKT 60 VDFSATKTLT LHQPTPLLRS NSLVSPDNNN TRNQHHEQML SFSSYKSQVP FLTTSTALME 120 RSSQQATAFP FYQHLPSSAH TRNTGYGYGS LNASMHGSFS GARGPFTPSQ RIELEHQALI 180 YKYILSNAPV PSNLLIPLKK SLHPFGLPYP ASYASNSYGW GTFHLGYSGN TDPEPGRCRR 240 TDGKKWRCSR DAVTDQKYCE RHINRGRHRS RKPVEGQTGH SNSKVVPTTS SVSTSVIANG 300 GAPNSLAISQ HELKNLQPVA ANPSADALVS RVQDSRSLSM MSSTINLKPN ESTFSFPKQD 360 FPWEESSQSV FGLVSSDSLL NPSQRSSYLN SKSYDESFLA FNDQETQDQN PLRQFIDDWP 420 KDESNRSVIT WPEELKSDWT QLSMSIPMAP PEFSSASSSP THERLALSPL KLSRELDPMH 480 AGLGMNGGLG EPNQKQTNWI PISWGSSMGG PLGEALANTS KNVNACKNSA LNLLTEGWDG 540 SPQLGSSPTG VLQKSTFCSL SNSSSGSSPI AENKKAHDGA NLCDDVVGSA LASSSSIPSL 600 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8316 | 0.0 | callus| flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU550449 | 3e-44 | EU550449.1 Arabidopsis thaliana isolate CS6714 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550450 | 3e-44 | EU550450.1 Arabidopsis thaliana isolate CS6732 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550451 | 3e-44 | EU550451.1 Arabidopsis thaliana isolate CS6751 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550452 | 3e-44 | EU550452.1 Arabidopsis thaliana isolate CS6781 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550453 | 3e-44 | EU550453.1 Arabidopsis thaliana isolate CS6796 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550454 | 3e-44 | EU550454.1 Arabidopsis thaliana isolate CS6797 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550455 | 3e-44 | EU550455.1 Arabidopsis thaliana isolate CS6799 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550456 | 3e-44 | EU550456.1 Arabidopsis thaliana isolate CS902 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550457 | 3e-44 | EU550457.1 Arabidopsis thaliana isolate CS6810 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550458 | 3e-44 | EU550458.1 Arabidopsis thaliana isolate CS6824 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550459 | 3e-44 | EU550459.1 Arabidopsis thaliana isolate CS6885 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550460 | 3e-44 | EU550460.1 Arabidopsis thaliana isolate CS6896 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550461 | 3e-44 | EU550461.1 Arabidopsis thaliana isolate CS6922 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550462 | 3e-44 | EU550462.1 Arabidopsis thaliana isolate CS906 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550463 | 3e-44 | EU550463.1 Arabidopsis thaliana isolate CS931 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550464 | 3e-44 | EU550464.1 Arabidopsis thaliana isolate CS1602 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550465 | 3e-44 | EU550465.1 Arabidopsis thaliana isolate CS6182 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550466 | 3e-44 | EU550466.1 Arabidopsis thaliana isolate CS6603 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550467 | 3e-44 | EU550467.1 Arabidopsis thaliana isolate CS6608 GRL1 (GRL1) gene, partial cds. | |||
GenBank | EU550468 | 3e-44 | EU550468.1 Arabidopsis thaliana isolate CS6626 GRL1 (GRL1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006466427.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A067GGN0 | 0.0 | A0A067GGN0_CITSI; Uncharacterized protein | ||||
STRING | XP_006466427.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-116 | growth-regulating factor 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g007514m |