PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007341m
Common NameCISIN_1g005465mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 608aa    MW: 67159.3 Da    PI: 8.0703
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007341mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.2e-28111164155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  orange1.1g007341m 111 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 164
                        79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011014.452143IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.5E-11462No hitNo description
SuperFamilySSF521725.83E-8448IPR011006CheY-like superfamily
PROSITE profilePS5129412.269108167IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-30108169IPR009057Homeodomain-like
SuperFamilySSF466896.09E-20108168IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-25111164IPR006447Myb domain, plants
PfamPF002491.1E-6113163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MFSVLSGNGD PKLVMKGITH GACDYLLKPV RIEELKNIWQ HVVRRKKIDA KDQNNSDNQD  60
KPHNGSGQAE GMGNSDQNGK LNKKRKDQNE DEDDEDDEDD HNHEDPTTQK KPRVVWSVEL  120
HRKFVAAVNQ LGIDKAVPKK ILDLMNVEKL TRENVASHLQ KYRLYLKRIS CVANQQANMV  180
AALGSSDPSY LRMSSVNGLG NYHTVGGPGQ FQNSTFRSFP ASGMLGRLNA PAGLGMHGLP  240
SSGMIPMRHA QNSDNTTNDQ GKFHPALLPG SHSGNILQGM PTSLELDQLQ LNKNITSISE  300
LPNTKDNTTF HVSSGFPDAR IGFGRSTNPL LDVNNNPLFL EGHPQEAHSN KMFGNQSLMS  360
LNSGSSSRLP DHGRCNDNWS SAVQSSGIQP NSFSLGGDYK QPTLHPGHLR DNLSTMALPI  420
GNSPCDVSSL HPLSNRFQDP KADLQFQAVQ DAPCRSNVMF SPLNSAVSIN GDVGPLGQCL  480
DTNKTFFHRS NEFDSLGQSN FVDHFSMKIN EVQRSSMQAS SNLKEGYLMG QQKTQGSYIS  540
TSVDSLEDLF MSSMVKEVRS YNLAFSSCQN AFINSFYTTL TIIVKNLLNL FNCLLLWFRT  600
KRRKFSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-26107170164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483453.10.0two-component response regulator ARR12
TrEMBLA0A067FWB20.0A0A067FWB2_CITSI; Uncharacterized protein
STRINGXP_006450308.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-96response regulator 12