PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007282m
Common NameCISIN_1g005491mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 610aa    MW: 68131.6 Da    PI: 6.7716
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007282mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.8e-2442141197
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  orange1.1g007282m  42 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 131
                        88****************************9445555669************************************************..44 PP

                        SEE..EEEEE CS
                 B3  88 sefelvvkvf 97 
                        +++el+v+v+
  orange1.1g007282m 132 ENGELHVGVR 141
                        99999**996 PP
2Auxin_resp107.31.7e-35168247183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F v+Y+Pr+  s+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk
  orange1.1g007282m 168 ASHAVATQTMFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 247
                        789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4233157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-3836171IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-2140142No hitNo description
PfamPF023622.6E-2142141IPR003340B3 DNA binding domain
PROSITE profilePS5086312.15342144IPR003340B3 DNA binding domain
SMARTSM010193.2E-2142144IPR003340B3 DNA binding domain
PfamPF065072.0E-32168247IPR010525Auxin response factor
PfamPF023091.6E-13475586IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-14492573No hitNo description
PROSITE profilePS5174526.665497578IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAEQETDEVY AQITLLPEPS QNEPTTPDPC PADSPRPKVH SFSKVLTASD TSTHGGFSVL  60
RKHATECLPP LDMNQSTPTQ ELVAKDLHGY EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL  120
VAGDTFVFLR GENGELHVGV RCLARQQSSM PSSVISSQSM HLGVLATASH AVATQTMFVV  180
YYKPRTSQFI ISLNKYLEAV NNKFAVGMRY KMRFEGEDSP ERRFSGTVVG VEDFSPHWKD  240
SKWRSLKVQW DEPASITRPD RVSPWEIEPF VASATPNLVQ PVLAKNKRPR LSMEVPPLDL  300
PSAASAPWSA RLAQSHNLTQ LSVTAEDKRI DNHVAWHHKH SDFSSNSNFM SRTQSDGEWL  360
TSPRVKFSQQ LFQEAIDDNK NISAWPAHSG HSTPHPSKPN NDTLLEQVET GRKTETGTSC  420
RLFGIELINH ATSSAPSEKV PVSSLTTEGH IISTISAAAD SDGKSDIAKE FKEKKQEQVQ  480
VSPKESQSKQ SCLTSNRSRT KVQMQGVAVG RALDLTTLVG YDHLIDELEE MFDIKGQLHT  540
RTKWEIVYTD DEGDMMLVGD DPWHEFCNMV KRIFICSSQD VKKMSPGSKL PMFSIEGEDI  600
LLSSDSAEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-135227084355Auxin response factor 1
4ldw_A1e-135227084355Auxin response factor 1
4ldw_B1e-135227084355Auxin response factor 1
4ldx_A1e-135227084355Auxin response factor 1
4ldx_B1e-135227084355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439306.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A067GME90.0A0A067GME9_CITSI; Auxin response factor
TrEMBLA0A067GMP50.0A0A067GMP5_CITSI; Auxin response factor
STRINGXP_006439306.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9