PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g007097m | ||||||||
Common Name | CISIN_1g006217mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 619aa MW: 69360.4 Da PI: 4.8956 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.5e-05 | 433 | 466 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f Lr+++P + ++Ka+iL +++Y+k+L+ orange1.1g007097m 433 NEKFMVLRSMVPYiS------EVDKASILSDTIKYLKKLE 466 99***********66......8***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.1E-42 | 4 | 158 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 9.064 | 416 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.62E-6 | 424 | 470 | No hit | No description |
SMART | SM00353 | 4.6E-6 | 426 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-9 | 431 | 482 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-8 | 433 | 475 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MVPRVLEWGD GYYNGDIKTR KTMQAMELTP DKIGLQRSKQ LRELYESLLK GESELAYKRP 60 SAALSPEDLT DAEWYYLVCM SFVFSSGQGL PGRALANSET IWLCNAQCAD SKVFSRSLLA 120 KSASIQTVIC FPHLDGVIEL GVTELVPEDP SLLQHIKASL LDFSKPFCSE KSSSPPYDED 180 DDSDPLCAKV SHEILDTVAL ESLYSPGEEN KFDGEGVYEL HGNINEELHL DSADECSKGC 240 EHNHQTEESF MVDGINGAAS QVQSWHFVDD DLSNGIPDSM HSSDHKSESL VNQAEGFPSS 300 KDENMSHIQL KELQEGNHTK LSLLDLGIVD GAHYRKTLSA IFGSSNRLTE NPCFLSVEHK 360 SSFVSWKKGG MVKRHWPGIQ QNLLKKILFS VPLMHGGCTH RSQKEICRKY CPVTMESDNF 420 CEEHISSDKR TENEKFMVLR SMVPYISEVD KASILSDTIK YLKKLEARVE ELESCMYSVD 480 SEPRPKRNYT EMVEQTSDNY DNKKLDNHKK PWINKRKACD IDETDPELNK FVPKDGLADV 540 KVSIQEMDVL IEMRCPSREY ILLDIMDAIN NLHLDAYSVV SSNLDGVLTL ALKSTFRGAA 600 IAPAGIIEQA LWKIAGKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 3e-15 | 5 | 156 | 85 | 227 | Transcription factor MYC3 |
4ywc_A | 3e-15 | 5 | 156 | 85 | 227 | Transcription factor MYC3 |
4ywc_B | 3e-15 | 5 | 156 | 85 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.10175 | 0.0 | flower| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF645811 | 0.0 | EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445042.1 | 0.0 | transcription factor EGL1 isoform X1 | ||||
Refseq | XP_006491098.1 | 0.0 | transcription factor EGL1 | ||||
TrEMBL | A0A067HE87 | 0.0 | A0A067HE87_CITSI; Uncharacterized protein | ||||
STRING | XP_006491098.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006445042.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-137 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g007097m |