PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007097m
Common NameCISIN_1g006217mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 619aa    MW: 69360.4 Da    PI: 4.8956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007097mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.51.5e-054334661755
                        HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        N++f  Lr+++P  +       ++Ka+iL  +++Y+k+L+
  orange1.1g007097m 433 NEKFMVLRSMVPYiS------EVDKASILSDTIKYLKKLE 466
                        99***********66......8***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-424158IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.064416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-6424470No hitNo description
SMARTSM003534.6E-6426471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-9431482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-8433475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MVPRVLEWGD GYYNGDIKTR KTMQAMELTP DKIGLQRSKQ LRELYESLLK GESELAYKRP  60
SAALSPEDLT DAEWYYLVCM SFVFSSGQGL PGRALANSET IWLCNAQCAD SKVFSRSLLA  120
KSASIQTVIC FPHLDGVIEL GVTELVPEDP SLLQHIKASL LDFSKPFCSE KSSSPPYDED  180
DDSDPLCAKV SHEILDTVAL ESLYSPGEEN KFDGEGVYEL HGNINEELHL DSADECSKGC  240
EHNHQTEESF MVDGINGAAS QVQSWHFVDD DLSNGIPDSM HSSDHKSESL VNQAEGFPSS  300
KDENMSHIQL KELQEGNHTK LSLLDLGIVD GAHYRKTLSA IFGSSNRLTE NPCFLSVEHK  360
SSFVSWKKGG MVKRHWPGIQ QNLLKKILFS VPLMHGGCTH RSQKEICRKY CPVTMESDNF  420
CEEHISSDKR TENEKFMVLR SMVPYISEVD KASILSDTIK YLKKLEARVE ELESCMYSVD  480
SEPRPKRNYT EMVEQTSDNY DNKKLDNHKK PWINKRKACD IDETDPELNK FVPKDGLADV  540
KVSIQEMDVL IEMRCPSREY ILLDIMDAIN NLHLDAYSVV SSNLDGVLTL ALKSTFRGAA  600
IAPAGIIEQA LWKIAGKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A3e-15515685227Transcription factor MYC3
4ywc_A3e-15515685227Transcription factor MYC3
4ywc_B3e-15515685227Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.101750.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6458110.0EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445042.10.0transcription factor EGL1 isoform X1
RefseqXP_006491098.10.0transcription factor EGL1
TrEMBLA0A067HE870.0A0A067HE87_CITSI; Uncharacterized protein
STRINGXP_006491098.10.0(Citrus sinensis)
STRINGXP_006445042.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-137bHLH family protein