PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006856m
Common NameCISIN_1g0067541mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-PHD
Protein Properties Length: 629aa    MW: 70891.3 Da    PI: 9.808
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006856mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.7e-10503548853
                        -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         ++ +e L ++F++n  ps+  +e L+k+l+L+ ++V  WF+N R+
  orange1.1g006856m 503 PPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 548
                        578899**************************************97 PP
2PHD30.77.1e-11240291151
                        SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 
                        +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e+++   w+C+ C++k
  orange1.1g006856m 240 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTESNQ--GWFCKFCECK 291
                        588888854455********56***************77776..6******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.21E-13231294IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-11236292IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.917238291IPR019787Zinc finger, PHD-finger
PfamPF006282.5E-8240291IPR019787Zinc finger, PHD-finger
SMARTSM002497.3E-8240289IPR001965Zinc finger, PHD-type
PROSITE patternPS013590241288IPR019786Zinc finger, PHD-type, conserved site
CDDcd155044.58E-25241288No hitNo description
Gene3DG3DSA:1.10.10.604.8E-12487547IPR009057Homeodomain-like
SuperFamilySSF466895.13E-10491552IPR009057Homeodomain-like
SMARTSM003894.8E-8493557IPR001356Homeobox domain
PROSITE profilePS5007112.066493553IPR001356Homeobox domain
CDDcd000866.01E-9496548No hitNo description
PfamPF000469.0E-8502548IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MPGAGKKVVK HSESGKSCFP KKDSGSELIA SLKFKKGSKI SKSKKLRSKS RCQSKTVNST  60
LLKRTVAESH SKGAGDDFAR SKSISQKNLH IKIDRKGSKN WASSKHKGKN SALVISKGNG  120
EVVDGDGETK KLRKGRSKKR RKEKVELDEA SRLQRRTRYL LIKMKLEQNL IDAYSGEGWK  180
GHSREKIRPE KELQRAKKQI LKCKIGIRDA IRQLDSLSSV GCIEGSVIAT DGSVHHEHII  240
CAKCKLREAF PDNDIVLCDG TCNCAFHQKC LDPPLDTESN QGWFCKFCEC KMEIIESMNA  300
HIGTSFSVNS NWQDIFKEEA AFPDGCSALL NQEEEWPSDD SEDDDYNPER RENSCSISRA  360
GTDDDPSSST SLSWFSDSET FSESMRWEME SNGYKNYSVD SSIGSDETSD GEIICGRRQR  420
RTVDYKKLYD EMFGKDASAF EQLSEDEDWG PAKRRRKEKE SDAVNSLMTL YGSEEKYSKV  480
KTAEVKKKLP SNAKIRRSFH RMPPNAVEKL RQVFAENELP SRIVKENLSK ELSLEPEKVN  540
KWFKNARYLA LKARKVESAR QVSGSPRISK ESSLETEKKN ADVLTLKNSL EETLICSPKS  600
LKKIHPKRIQ NQSAVAAASR KISRKELL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132142RKGRSKKRRKE
2137141KKRRK
3453458RRRKEK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453258.10.0pathogenesis-related homeodomain protein isoform X2
RefseqXP_024953065.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-162PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A067F6X40.0A0A067F6X4_CITSI; Uncharacterized protein
STRINGXP_006453258.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-161pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]