PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006759m
Common NameCISIN_1g005938mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 633aa    MW: 68507 Da    PI: 5.9314
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006759mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.8e-28220273155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  orange1.1g006759m 220 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 273
                        79*******************.********************************8 PP
2Response_reg79.21.4e-26361441109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + +++l+q+l++  y +v++++++  al++l+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a g  + + + +
  orange1.1g006759m  36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKgcFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGI 125
                        89*********************.*******************************************6654.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ +eel +
  orange1.1g006759m 126 RHGACDYLIKPIREEELKN 144
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.82E-3733162IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.6E-4233172No hitNo description
SMARTSM004482.8E-3134146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.30335150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2336144IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.20E-2837149No hitNo description
PROSITE profilePS5129410.655217276IPR017930Myb domain
SuperFamilySSF466891.34E-19217277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29218278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24220273IPR006447Myb domain, plants
PfamPF002499.0E-7222271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV  60
TTCSQAAVAL DILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADGRVSA  120
VMRGIRHGAC DYLIKPIREE ELKNIWQHVV RKRWNENKEH ENSGSLEETD HHKRGSDEIE  180
YASSVNEGTE GTFKAQRKRI SAKEEDDGEL ESDDPSTTKK PRVVWSVELH QQFVSAVNQL  240
GIDKAVPKRI LELMNVPGLT RENVASHLQK FRLYLKRLNG VSQQGGITNS FCAPIETNVK  300
LGSLGRFDIQ ALAASGQIPP QTLAALHAEL LGRPTGNLVT AVDQPALLQA TLQGPKCIPA  360
DHGFGVWASN SLGAVASTSN LGGLNPQNGN MLMDILHQQQ QKQQNQQSQQ QSTLSETSRS  420
ISVQPSCLVV PSRSSASFQA GNSPASVNQS CSFNRGAVVD YSLLSSQSNN SSLNMGQISD  480
GDIKTTAVIT GYLAPGSLSP SASSCSVTAD NTSSQQVQNS NIAFRAARQV PGLVSNVGDI  540
QGSYGAKSGE VFDLGSLRNH GFMGKGNCIP SRLAVDEFES PMNNLNYGNI YLDNNANKVK  600
EEPNLEFVEN AKVGIPMYQQ YAPNDLMSVF TD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22216279164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.15030.0flower| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469262.10.0two-component response regulator ORR21 isoform X4
SwissprotA2XE311e-158ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-158ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A067FC670.0A0A067FC67_CITSI; Two-component response regulator
STRINGXP_006448147.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-126response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]