PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g006754m | ||||||||
Common Name | CISIN_1g0067541mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 633aa MW: 71256.7 Da PI: 9.7626 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.7 | 2.7e-10 | 507 | 552 | 8 | 53 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps+ +e L+k+l+L+ ++V WF+N R+ orange1.1g006754m 507 PPNAVEKLRQVFAENELPSRIVKENLSKELSLEPEKVNKWFKNARY 552 578899**************************************97 PP | |||||||
2 | PHD | 34.1 | 6.1e-12 | 240 | 295 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++k orange1.1g006754m 240 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTESIPPGdqGWFCKFCECK 295 588888854455********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.4E-13 | 231 | 298 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 3.2E-11 | 236 | 296 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.077 | 238 | 295 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.0E-7 | 240 | 293 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.4E-9 | 240 | 295 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 241 | 292 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd15504 | 7.06E-31 | 241 | 292 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-12 | 491 | 551 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-10 | 495 | 556 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.066 | 497 | 557 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-8 | 497 | 561 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.69E-9 | 500 | 552 | No hit | No description |
Pfam | PF00046 | 9.1E-8 | 506 | 552 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MPGAGKKVVK HSESGKSCFP KKDSGSELIA SLKFKKGSKI SKSKKLRSKS RCQSKTVNST 60 LLKRTVAESH SKGAGDDFAR SKSISQKNLH IKIDRKGSKN WASSKHKGKN SALVISKGNG 120 EVVDGDGETK KLRKGRSKKR RKEKVELDEA SRLQRRTRYL LIKMKLEQNL IDAYSGEGWK 180 GHSREKIRPE KELQRAKKQI LKCKIGIRDA IRQLDSLSSV GCIEGSVIAT DGSVHHEHII 240 CAKCKLREAF PDNDIVLCDG TCNCAFHQKC LDPPLDTESI PPGDQGWFCK FCECKMEIIE 300 SMNAHIGTSF SVNSNWQDIF KEEAAFPDGC SALLNQEEEW PSDDSEDDDY NPERRENSCS 360 ISRAGTDDDP SSSTSLSWFS DSETFSESMR WEMESNGYKN YSVDSSIGSD ETSDGEIICG 420 RRQRRTVDYK KLYDEMFGKD ASAFEQLSED EDWGPAKRRR KEKESDAVNS LMTLYGSEEK 480 YSKVKTAEVK KKLPSNAKIR RSFHRMPPNA VEKLRQVFAE NELPSRIVKE NLSKELSLEP 540 EKVNKWFKNA RYLALKARKV ESARQVSGSP RISKESSLET EKKNADVLTL KNSLEETLIC 600 SPKSLKKIHP KRIQNQSAVA AASRKISRKE LL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 142 | RKGRSKKRRKE |
2 | 137 | 141 | KKRRK |
3 | 457 | 462 | RRRKEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006474260.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_006474261.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_024048235.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-169 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A067FEK9 | 0.0 | A0A067FEK9_CITSI; Uncharacterized protein | ||||
STRING | XP_006474260.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8699 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-168 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g006754m |
Publications ? help Back to Top | |||
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