PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006734m
Common NameCISIN_1g006081mg, LOC102617759
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 634aa    MW: 68759.3 Da    PI: 8.6396
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006734mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.6e-15152191242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        ++k+CnC++s+Clk+YCeCfaag +C+  C+C +C+N+ e+
  orange1.1g006734m 152 KQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEH 191
                        89**************************.********9876 PP
2TCR50.93.2e-16236275140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  orange1.1g006734m 236 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFE 275
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.8E-19151191IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.216152276IPR005172CRC domain
PfamPF036381.1E-11153188IPR005172CRC domain
SMARTSM011141.8E-19236277IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12239274IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MEQGETISDF APKKLARQLD FTICRASANG LLPEQSVKSQ SSQPQSHSPL QPQPPKSQPQ  60
VQSKVASPSQ SQPLVRLQLL PPSSQPHVQA HMRSPSQAMP QWQARPQHVR MVNRVPHPVH  120
KLPLPTLPPG KQESPRSRPR ANTDGKDGTP KKQKQCNCRN SRCLKLYCEC FAAGIYCDGC  180
NCVNCHNNVE HEVARQEAVG ATLERNPNAF RPKIASSPHG AQDAREDARE AQLAAKHNKG  240
CHCKKSGCLK KYCECFQANI LCSENCRCLD CKNFEGSEER RALFHGDHNG IAFMQRAANA  300
AIIGAVGSSG YGTLMTSNKR KSEELLFGVA AKDQSVIRNP QSQQGNNVQN SAVPCSQSVP  360
VSQTANASVL GSTKSALRSP LADILQPQDM KELCSLLVMV SSEATKTLTK KVGAMQTERE  420
GSRSSVASPI QEGEDSRKGH EVHNGIPDDR QSGNQMDVDG TSGSGSDGGD MLNERPLSPG  480
TRALMCDEED SAFMQAGPQT GLASKSTVQK SNAYASTRIY AEQERLILTR FRDFLNRLIT  540
CGSIKETMCS PLVKSETRSQ QKAVEDGTSR SGTEVRGYME PCGYGSAKSA VSVTLEPSCT  600
TTSVSSRQNN DLPMRVGLSN GQRVVDSEIR NRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-3315328511132Protein lin-54 homolog
5fd3_B7e-3315328511132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476073.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-148TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067GJ650.0A0A067GJ65_CITSI; Uncharacterized protein
STRINGXP_006476073.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-133Tesmin/TSO1-like CXC domain-containing protein