PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006682m
Common NameCISIN_1g005058mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 636aa    MW: 71075.7 Da    PI: 6.8669
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006682mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17.1e-094004371954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  orange1.1g006682m 400 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 437
                        554459******************************88 PP

2BELL119.51.5e-38261332172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e++elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi
  orange1.1g006682m 261 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 332
                        679*******************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-61199330IPR006563POX domain
PfamPF075265.3E-48205328IPR006563POX domain
PROSITE profilePS5007112.179378441IPR001356Homeobox domain
SMARTSM003895.8E-9381445IPR001356Homeobox domain
CDDcd000863.21E-11381442No hitNo description
SuperFamilySSF466895.56E-17382447IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27384447IPR009057Homeodomain-like
PfamPF059208.5E-18398437IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MEMIGFSKNL QQHTSDNNSV MWKEFFNNKP AGNNPGPSSS KTINESTTSD HHFYQHDHQF  60
NKQDFTTGMS ETSGENLIVG HDHSDVAGAW QENNSRLLVD DSSLRCVFPC EGNERPSQGL  120
SLSLSSSNPS SIGLQSFELR QTNHNDHDHQ QDDMRFISSS TSREGFFGKP AAGIQQQQQM  180
MQDGFLGKPA IPPNIHHQTG HQFQLRNSKY LAPAQEILKE FCSLGTKQND ATKLKSNKAK  240
QQWDDENAGS SSRKQSLCSL EFMELQKRKT KLLSMLEEVD RRYRHYCDQM KAVVSSFEAV  300
AGNGAARVYS ALASKAMSRH FRCLRDGIVG QIQATKKAMG EKDPVAPGTS RGETPRLKII  360
DQTLRQQRAF QQMSMMESHP WRPQRGLPER SVSVLRAWLF EHFLHPYPSD VDKHILARQT  420
GLSRSQVSNW FINARVRLWK PMVEEMYLEE TKEQDNNMAS SDGATDLDDN SGRPNQTQNP  480
PADQKPTQDQ LVRIDSECLS SIINNHDKND ANKNPNKALP SHHMQQNFGS FGAMELDFSS  540
YNQHTVGGVS YANDSANHQN FNGGSGGVSL TLGLQQHGGS GVSLAFSPAS QSSLFYPRDH  600
IEDCQQVQYS LLDGEGQNLP YRNLMGAQLL HDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15387445563Homeobox protein Meis2
3k2a_B2e-15387445563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.81690.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045025.10.0homeobox protein BEL1 homolog isoform X2
SwissprotQ388971e-146BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A067GLL10.0A0A067GLL1_CITSI; Uncharacterized protein
STRINGXP_006439494.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-137TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]