PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g006682m | ||||||||
Common Name | CISIN_1g005058mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 636aa MW: 71075.7 Da PI: 6.8669 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.1e-09 | 400 | 437 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + orange1.1g006682m 400 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 437 554459******************************88 PP | |||||||
2 | BELL | 119.5 | 1.5e-38 | 261 | 332 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi orange1.1g006682m 261 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 332 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-61 | 199 | 330 | IPR006563 | POX domain |
Pfam | PF07526 | 5.3E-48 | 205 | 328 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 378 | 441 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.8E-9 | 381 | 445 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.21E-11 | 381 | 442 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 382 | 447 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 384 | 447 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.5E-18 | 398 | 437 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MEMIGFSKNL QQHTSDNNSV MWKEFFNNKP AGNNPGPSSS KTINESTTSD HHFYQHDHQF 60 NKQDFTTGMS ETSGENLIVG HDHSDVAGAW QENNSRLLVD DSSLRCVFPC EGNERPSQGL 120 SLSLSSSNPS SIGLQSFELR QTNHNDHDHQ QDDMRFISSS TSREGFFGKP AAGIQQQQQM 180 MQDGFLGKPA IPPNIHHQTG HQFQLRNSKY LAPAQEILKE FCSLGTKQND ATKLKSNKAK 240 QQWDDENAGS SSRKQSLCSL EFMELQKRKT KLLSMLEEVD RRYRHYCDQM KAVVSSFEAV 300 AGNGAARVYS ALASKAMSRH FRCLRDGIVG QIQATKKAMG EKDPVAPGTS RGETPRLKII 360 DQTLRQQRAF QQMSMMESHP WRPQRGLPER SVSVLRAWLF EHFLHPYPSD VDKHILARQT 420 GLSRSQVSNW FINARVRLWK PMVEEMYLEE TKEQDNNMAS SDGATDLDDN SGRPNQTQNP 480 PADQKPTQDQ LVRIDSECLS SIINNHDKND ANKNPNKALP SHHMQQNFGS FGAMELDFSS 540 YNQHTVGGVS YANDSANHQN FNGGSGGVSL TLGLQQHGGS GVSLAFSPAS QSSLFYPRDH 600 IEDCQQVQYS LLDGEGQNLP YRNLMGAQLL HDLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 387 | 445 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 387 | 445 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8169 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045025.1 | 0.0 | homeobox protein BEL1 homolog isoform X2 | ||||
Swissprot | Q38897 | 1e-146 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A067GLL1 | 0.0 | A0A067GLL1_CITSI; Uncharacterized protein | ||||
STRING | XP_006439494.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-137 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g006682m |
Publications ? help Back to Top | |||
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