PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006569m
Common NameCISIN_1g002476mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 641aa    MW: 72131.2 Da    PI: 6.6758
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006569mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11642.6e-51251422118
               CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        ++e k+rwl+++ei+aiL n + +++ +++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ p
  orange1.1g006569m  25 MEEaKTRWLRPNEIHAILCNSKYFSINAKPVNLPKSGTVVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDSP 116
                        55669*************************************************************************************** PP

               CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                        tf rrcywlL+++le+ivlvhy+e++
  orange1.1g006569m 117 TFVRRCYWLLDKTLENIVLVHYRETH 142
                        ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.33621147IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-7424142IPR005559CG-1 DNA-binding domain
PfamPF038597.1E-4627140IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.4E-4364455IPR013783Immunoglobulin-like fold
PfamPF018336.4E-5366452IPR002909IPT domain
SuperFamilySSF812961.31E-14367453IPR014756Immunoglobulin E-set
CDDcd002041.42E-7551617No hitNo description
SuperFamilySSF484033.89E-9560617IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-7560617IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502979.967569617IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MAELLVGSEI HGFHTLKDLD VANMMEEAKT RWLRPNEIHA ILCNSKYFSI NAKPVNLPKS  60
GTVVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKTL ENIVLVHYRE THEGTPATPP NSHSSSISDQ SAPLLLSEEF NSGAGHAYSA  180
GGKELQAPNE SLTVQNHEMR LHELNTLEWD DLVVTNDSND STEPRGDKFS HFDQQNHTAI  240
KGAASNGSFF PSHDSYAEVS SGGCLTSLSQ PIDRSNNTQF NNLDGVYSEL MGTQSSVSSQ  300
RNEFGEVCTG DSLDILAGDG LQSQDSFGKW MNYIMTDSPG SVDDPVLEPS ISSGHHQFTV  360
PEHLFSITDV SPAWAFSNEK TKILVTGFFH KDCLHLSKSN MFCVCGEVRV PAEFVQAGVY  420
RCFLPPHSPG LFLLYMSLDG HKPISQVLNF EYRSPQLHAP VASSEDKSKW EEFQVQMRLA  480
HLLFSSFKGL NILSSKVPPN SLKEAKKFAS KSTCISNSWA YLFKSVGDKR TSLPEAKDSF  540
FELTLKSKLK EWLLERVVEG SKTTEYDVHG QGVIHLCAML GYTWAILLFS WSGLSLDFRD  600
KYGWTALHWA AYYGRYESSS YHIYQISMQL VRLSLYALYK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.22121e-172fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488865.10.0calmodulin-binding transcription activator 5
RefseqXP_024036941.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A067G8Z00.0A0A067G8Z0_CITSI; Uncharacterized protein
STRINGXP_006488865.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]