PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006526m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family STAT
Protein Properties Length: 643aa    MW: 71830.7 Da    PI: 6.4667
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006526mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT192.44.9e-602153331119
               STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipkl 92 
                        ldvvllna+gqpv+k+ve+ a+Llyad+g++vek++d eapLL+sydG+ef+++drp+kll+GrasfklkisqLsskcdnrLf+i+fe+pkl
  orange1.1g006526m 215 LDVVLLNAFGQPVNKEVEITAALLYADNGSLVEKTSDGEAPLLTSYDGIEFPTYDRPSKLLNGRASFKLKISQLSSKCDNRLFCIRFEVPKL 306
                        8******************************************************************************************* PP

               STAT  93 kkypfleavskpirCisrsrntrsssl 119
                          +pfle++s pirCisr+r+ r+ s+
  orange1.1g006526m 307 VGFPFLEVLSYPIRCISRTRTIRTFSV 333
                        **********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498994.46E-823137IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2006.5E-524168IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555503.32E-6595635IPR000980SH2 domain
Gene3DG3DSA:3.30.505.101.2E-5595636IPR000980SH2 domain
PROSITE profilePS500018.892599642IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MGENVIKGED YYLLKDLRFK IEGDEEGFSL CFWVYLMKST TFSATLISQV DIGGNAPFLA  60
LNEKKILMLF PFISLHKEAP DPGKSAPLTE LQHASMDTEF PLESWIHVGC RVSTDSVQLH  120
IDGEIVAEKP VSSSFCKGSM SNSRTKITLV GSNMQGYVHD AKILPLNLSI KDHYHKDPPL  180
LLSIDTSSAS EIEEDSDGVW SIVGGKASCR RIFSLDVVLL NAFGQPVNKE VEITAALLYA  240
DNGSLVEKTS DGEAPLLTSY DGIEFPTYDR PSKLLNGRAS FKLKISQLSS KCDNRLFCIR  300
FEVPKLVGFP FLEVLSYPIR CISRTRTIRT FSVPFKRTPA AIHPTNGSQS CGFDDGSLKI  360
HHNTVLEAKP SPSSKRVRLE QEKISAMEQL DGECSPHPLT ANKAEGAFAK GLDGTHENTE  420
DAGISPADYE SKGVRNVALK NSGKSVSDLT IFKYCLGGLA DRSHLLKEIV TSFSDEEILE  480
FAHQVSIYTG CSHHRFQIMT AKRLIEEGRN AWNLISQNNP HVHWDCAVFE IEEQFKKISC  540
CSTRPLSHQD FELLRRIAGC RDFLAQENFE KLWCWLYPVA FTLSSDWINK TWRSTSPKWI  600
EGFITKEEAE YSLQGPRGLQ EPGTFVLRFP TSRTGRTQMQ VV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442321.10.0SH2 domain-containing protein A isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A2H5PRP00.0A0A2H5PRP0_CITUN; Uncharacterized protein
STRINGXP_006442321.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]