PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g006526m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | STAT | ||||||||
Protein Properties | Length: 643aa MW: 71830.7 Da PI: 6.4667 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 192.4 | 4.9e-60 | 215 | 333 | 1 | 119 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipkl 92 ldvvllna+gqpv+k+ve+ a+Llyad+g++vek++d eapLL+sydG+ef+++drp+kll+GrasfklkisqLsskcdnrLf+i+fe+pkl orange1.1g006526m 215 LDVVLLNAFGQPVNKEVEITAALLYADNGSLVEKTSDGEAPLLTSYDGIEFPTYDRPSKLLNGRASFKLKISQLSSKCDNRLFCIRFEVPKL 306 8******************************************************************************************* PP STAT 93 kkypfleavskpirCisrsrntrsssl 119 +pfle++s pirCisr+r+ r+ s+ orange1.1g006526m 307 VGFPFLEVLSYPIRCISRTRTIRTFSV 333 **********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 4.46E-8 | 23 | 137 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:2.60.120.200 | 6.5E-5 | 24 | 168 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 3.32E-6 | 595 | 635 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 1.2E-5 | 595 | 636 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 8.892 | 599 | 642 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MGENVIKGED YYLLKDLRFK IEGDEEGFSL CFWVYLMKST TFSATLISQV DIGGNAPFLA 60 LNEKKILMLF PFISLHKEAP DPGKSAPLTE LQHASMDTEF PLESWIHVGC RVSTDSVQLH 120 IDGEIVAEKP VSSSFCKGSM SNSRTKITLV GSNMQGYVHD AKILPLNLSI KDHYHKDPPL 180 LLSIDTSSAS EIEEDSDGVW SIVGGKASCR RIFSLDVVLL NAFGQPVNKE VEITAALLYA 240 DNGSLVEKTS DGEAPLLTSY DGIEFPTYDR PSKLLNGRAS FKLKISQLSS KCDNRLFCIR 300 FEVPKLVGFP FLEVLSYPIR CISRTRTIRT FSVPFKRTPA AIHPTNGSQS CGFDDGSLKI 360 HHNTVLEAKP SPSSKRVRLE QEKISAMEQL DGECSPHPLT ANKAEGAFAK GLDGTHENTE 420 DAGISPADYE SKGVRNVALK NSGKSVSDLT IFKYCLGGLA DRSHLLKEIV TSFSDEEILE 480 FAHQVSIYTG CSHHRFQIMT AKRLIEEGRN AWNLISQNNP HVHWDCAVFE IEEQFKKISC 540 CSTRPLSHQD FELLRRIAGC RDFLAQENFE KLWCWLYPVA FTLSSDWINK TWRSTSPKWI 600 EGFITKEEAE YSLQGPRGLQ EPGTFVLRFP TSRTGRTQMQ VV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006442321.1 | 0.0 | SH2 domain-containing protein A isoform X1 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A2H5PRP0 | 0.0 | A0A2H5PRP0_CITUN; Uncharacterized protein | ||||
STRING | XP_006442321.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g006526m |
Publications ? help Back to Top | |||
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