PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006479m
Common NameCISIN_1g006040mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 644aa    MW: 68505 Da    PI: 5.9563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006479mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.8e-16377423455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  orange1.1g006479m 377 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 423
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.02E-17369427No hitNo description
Gene3DG3DSA:4.10.280.103.0E-20370431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-20370435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-14377423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MLNGIQMSDP SGEMGLNQDD DMVPWLNYAV DESLQQDYCS DFLHELSGVT GNELSSQNNF  60
ASFDKRSSSN QFDREFNSVF GNHGARLEHG NVSKVSSVGG GEATRPRSST NPLYTSSSQQ  120
CQTSLPNLRS GVSDSTSNGI KNSTDNGIFQ GSNPTATGNL SGLKLHKQDQ RLSTNNSGVM  180
NFSHFARPVA LVRANLQNIG SMPGARLSRI ERMGSKDKSS VASRSPVESP LIDSSGCLRK  240
ESSCQPAAVT SKVDVKPQEA KSSEQPVSEP PEAACREDAL NNDKKPSQVH AESATKGVVE  300
SEKTVEPVVA ASSVCSGNSV ERASDDLPHN VKRKHCDLDD SECPSEEQDV EEESVGVKKQ  360
VPGRVGTGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK  420
TLQLQVQIMS MGAGFYMPPM MYPSGMQHMH AAHMAHFPPI GIGMGMGVGY GMGMPDINGG  480
SSCYPMVQVP AMHGAHFPGT SFSGSSALQG MAGSNFQLLG LPAQGHPMSM PHAPLNPLSG  540
GPIMKSAMGL NPAGMVGSMD NTDAAKGSTS KDLVQNVNSQ VKQNTGAKGP VDQASGQCEA  600
TNEGSAEPAA VQDNCQASEV NGPVTYNSSR KNENESSNPA FFE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381386ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423962.10.0transcription factor PIF3
RefseqXP_006480339.10.0transcription factor PIF3
TrEMBLA0A067ER790.0A0A067ER79_CITSI; Uncharacterized protein
STRINGXP_006480339.10.0(Citrus sinensis)
STRINGXP_006423961.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-55phytochrome interacting factor 3